Locus 7606

Sequence ID 3L_DroMel_CAF1
Location 20,470,891 – 20,470,985
Length 94
Max. P 0.604408
window12358

overview

Window 8

Location 20,470,891 – 20,470,985
Length 94
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 89.30
Mean single sequence MFE -28.45
Consensus MFE -20.12
Energy contribution -21.37
Covariance contribution 1.25
Combinations/Pair 1.07
Mean z-score -1.78
Structure conservation index 0.71
SVM decision value 0.14
SVM RNA-class probability 0.604408
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20470891 94 + 23771897
AACUGGUUGAGGGG--CAUAAAAAUAUAGCUCUAAAUGGCUCACUUAGUGGGUUAGUCAGCCAGCCGCUUUCUCAGUGUUUAGCCGGAAGCAAAUG
..((((((((((((--((((....))).)))))...((((((((...)))))))).))))))))..((((((...((.....)).))))))..... ( -29.90)
>DroSec_CAF1 13555 94 + 1
AACUGGUUGAGGGG--UAUAAAAAUAAAGCACUAAAUGGCUCACUUAGUGGGUUAGUCAGCCAGCCGCUUUCUCAGUGGCUAGCCGGAAGCAAAUG
..(((((((.....--....................(((((.(((.........))).)))))((((((.....)))))))))))))......... ( -25.40)
>DroSim_CAF1 13201 94 + 1
AACUGGUUGAGGGG--UAUAAAAAUAUAGCCCUAAAUGGCUCACUUAGUGGGUUAGUCAGCCAGCCGCUUUCUCACUGGUUAGCCGGAAGCAAAUG
..(((((((((((.--((((....)))).)))....((((((((...)))))))).))))))))..((((.....((((....))))))))..... ( -33.40)
>DroEre_CAF1 13440 96 + 1
AACUGGUUGGGGUAAAAAUACAAGUAUAGCUCUAAAUGGCUCACUUAGUGGGUUAGUCAGCCAGCAACAUUCUGAGCGGUUCGCCGGAAGCAAAUG
..(((((((((((....(((....))).))))....((((((((...))))))))..))))))).....(((((.(((...))))))))....... ( -25.10)
>consensus
AACUGGUUGAGGGG__UAUAAAAAUAUAGCUCUAAAUGGCUCACUUAGUGGGUUAGUCAGCCAGCCGCUUUCUCAGUGGUUAGCCGGAAGCAAAUG
..((((((((((((...(((....)))..))))...((((((((...)))))))).))))))))..((((((.............))))))..... (-20.12 = -21.37 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:28 2006