| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,467,463 – 20,467,558 |
| Length | 95 |
| Max. P | 0.633325 |
| Location | 20,467,463 – 20,467,558 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 97.28 |
| Mean single sequence MFE | -23.03 |
| Consensus MFE | -21.60 |
| Energy contribution | -21.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.633325 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20467463 95 - 23771897 GGUCAUCAUACUAACGAUGGCCAUCGAAAGGCACACAUUGCGGCCCCA---GUGCAGUAAUUAUUAAGAAUAAUUAUUGUUAUUAUUUUGUAUAGGAA (((((((........)))))))..((((((((.(.......))))...---..(((((((((((.....))))))))))).....)))))........ ( -22.20) >DroSec_CAF1 10148 98 - 1 AGUCAUCAUACUAACGAUGGCCAUCGAAAGGCACACAUUGCGGCCCCAGCAGUGCAGUAAUUAUUAAGAAUAAUUAUUGUUAUUAUUUUGUAUAGGAA ..........(((((((.((((..(....)(((.....)))))))........(((((((((((.....))))))))))).......)))).)))... ( -21.60) >DroSim_CAF1 9827 98 - 1 GGUCAUCAUACUAACGAUGGCCAUCGAAAGGCACACAUUGCGGCCCCAGCAGUGCAGUAAUUAUUAAGAAUAAUUAUUGUUAUUAUUUUGUAUAGGAA (((((((........))))))).((....)).(((((((((.......))))))((((((((((.....)))))))))).........)))....... ( -25.30) >consensus GGUCAUCAUACUAACGAUGGCCAUCGAAAGGCACACAUUGCGGCCCCAGCAGUGCAGUAAUUAUUAAGAAUAAUUAUUGUUAUUAUUUUGUAUAGGAA ..........(((((((.((((..(....)(((.....)))))))........(((((((((((.....))))))))))).......)))).)))... (-21.60 = -21.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:27 2006