Locus 7604

Sequence ID 3L_DroMel_CAF1
Location 20,462,353 – 20,462,449
Length 96
Max. P 0.853309
window12356

overview

Window 6

Location 20,462,353 – 20,462,449
Length 96
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 84.84
Mean single sequence MFE -24.70
Consensus MFE -16.12
Energy contribution -16.84
Covariance contribution 0.72
Combinations/Pair 1.23
Mean z-score -2.44
Structure conservation index 0.65
SVM decision value 0.80
SVM RNA-class probability 0.853309
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20462353 96 - 23771897
---------AUGCGUGGUUAUAAUGGGCUUUGUUAUACUUAUAGUGUUUAUAUCCCUUUAUGCCAUCGUGAAGAGAUAUUCGAAAAACAAAAAAUACCAUGCCAU
---------..((((((((((((..(...)..))))).......((((((((((.(((((((....))))))).))))).....)))))......)))))))... ( -21.10)
>DroSec_CAF1 5058 96 - 1
---------AUGCGUGGUUAUAAUGGGCUUUGUUAUACUUUUAGUGUCGAUAUCCCUUUAUGCCAUCGUGAAGAGAUAUUCGAAAAGCAAAAAAUACCAUGCCAU
---------..(((((((........(((((....(((.....)))((((((((.(((((((....))))))).)))).))))))))).......)))))))... ( -27.66)
>DroSim_CAF1 4692 96 - 1
---------AUGCGUGGUUAUAAUGGGCUUUGUUAUACUUUUAGUGUCGAUAUCCCUUUAUGCCAUCGUGAAGAGAUAUUCGAAAAGCAAAAAAUACCAUGCCAU
---------..(((((((........(((((....(((.....)))((((((((.(((((((....))))))).)))).))))))))).......)))))))... ( -27.66)
>DroEre_CAF1 5336 105 - 1
UGUCAUUGCAUUUGCAGUUAUAAUGGUGUUAACUAUAUUAUUAGUGUUGAUAUGUCUUUAUGCCAUCGUAAAGAGAUAUUCGAUAGGCAAAAAAUACCAGGCCAU
.((((((((....))))).....(((((((.((((......))))((((((((.((((((((....)))))))).))).)))))........))))))))))... ( -27.20)
>DroYak_CAF1 5125 96 - 1
---------AUGCGUAGUUGUAAUGGUGUUAGUUAUAUUUUUAGUAUUGAUAUUUCUUUAUGCCAUCGUGAAGAGAUAUUCCAUAAGCAAAAAAUACCAUGCCAU
---------.((((....))))((((((((....((((.....)))).((((((((((((((....))))))))))))))............))))))))..... ( -19.90)
>consensus
_________AUGCGUGGUUAUAAUGGGCUUUGUUAUACUUUUAGUGUUGAUAUCCCUUUAUGCCAUCGUGAAGAGAUAUUCGAAAAGCAAAAAAUACCAUGCCAU
...........(((((((((((((.......))))))......((.((((((((.(((((((....))))))).)))).))))...)).......)))))))... (-16.12 = -16.84 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:26 2006