Locus 7603

Sequence ID 3L_DroMel_CAF1
Location 20,460,932 – 20,461,052
Length 120
Max. P 0.592830
window12355

overview

Window 5

Location 20,460,932 – 20,461,052
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.06
Mean single sequence MFE -47.62
Consensus MFE -24.59
Energy contribution -25.43
Covariance contribution 0.84
Combinations/Pair 1.34
Mean z-score -2.29
Structure conservation index 0.52
SVM decision value 0.12
SVM RNA-class probability 0.592830
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20460932 120 - 23771897
ACAUCGUCCAGGGCCACCUCCUGCGGUGUGGUCACAAUUAUGGCUCCGUGGCAACCAACCUCCUUCAGGCACUCCAUUACGGUGAUGUGCUCAUCCGAAGUGCCGGGUGGCGUAUCGAUA
..((((....(.(((((((.(..(((...(((((......))))))))..)................((((((......((((((.....))).))).))))))))))))).)..)))). ( -39.00)
>DroVir_CAF1 3363 120 - 1
ACAUCAUCCAAUGCGACGCCUUGCGGCGUUGUCACAAUAAUUGCACCAUUGCAGGGCACCUCGCGCAUGCACUCCAUAACAGUAAUGUGCUCAUCCGAGGUGCCAGGCGGUGUAUCAAUG
............((((((((....)))))))).........((((((...((..(((((((((.....((((..............)))).....)))))))))..))))))))...... ( -46.64)
>DroPse_CAF1 4370 120 - 1
ACAUCGUCCAGCGCCACGCUCUGUGGCGUUGUUACAAUGAUGGCACCAUUGCAGGGCACUUCACGCAUGCACUCCAUGACGGUUAUGUGUUCGUCGGAGGUUCCGGGUGGCGUGUCGAUG
.(((((....((((((((((((((((.((..((.....))..)).))...)))))))......((...((.((((..(((((........)))))))))))..)).)))))))..))))) ( -49.40)
>DroMoj_CAF1 3201 120 - 1
ACAUCGUCCAAGGCCACGCCCUGCGGCGUUGUCACAAUGAUUGCACCAUUGCAAGGCACCUCGCGCAUGCAUUCCAUAACCGUGAUGUGCUCGUCCGAGGUGCCAGGCGGCGUGUCAAUG
...........(((.(((((....((.((.(((.....))).)).))...((..(((((((((.((..((((..(((....)))..))))..)).)))))))))..)))))))))).... ( -49.20)
>DroAna_CAF1 3097 120 - 1
ACAUCAUCCAGAGCAACACCUUGCGGCGUAGUAACAAUGAUAGCUCCGUUGCAGGGAACCUCUCUGAGGCACUCCAUUACGGUAAUGUGUUCAUCCGAUGUGCCCGGUGGCGUGUCGAUG
.((((...(((((.....((((((((((.(((..........))).)))))))))).....))))).(((((.(((((..((((...((......))...)))).))))).))))))))) ( -44.00)
>DroPer_CAF1 3280 120 - 1
ACAUCAUCCAGCGCCACGCUCUGUGGCGUUGUUACAAUGAUGGCGCCAUUGCAGGGCACUUCACGCAUGCACUCCAUGACGGUUAUGUGCUCGUCGGAGGUGCCGGGUGGCGUGUCGAUG
....((((..(((((((((...(((((((..((.....))..))))))).))..((((((((.(((..((((.((.....))....))))..).))))))))))..)))))))...)))) ( -57.50)
>consensus
ACAUCAUCCAGCGCCACGCCCUGCGGCGUUGUCACAAUGAUGGCACCAUUGCAGGGCACCUCACGCAUGCACUCCAUAACGGUAAUGUGCUCAUCCGAGGUGCCGGGUGGCGUGUCGAUG
............((((((((((((((.(.(((..........))).).)))))))))(((((......((((.((.....))....))))......))))).....)))))......... (-24.59 = -25.43 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:25 2006