Locus 7601

Sequence ID 3L_DroMel_CAF1
Location 20,448,713 – 20,448,806
Length 93
Max. P 0.500000
window12350

overview

Window 0

Location 20,448,713 – 20,448,806
Length 93
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 81.32
Mean single sequence MFE -16.06
Consensus MFE -9.99
Energy contribution -10.91
Covariance contribution 0.92
Combinations/Pair 1.24
Mean z-score -1.56
Structure conservation index 0.62
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20448713 93 - 23771897
UAUUUUGC-----UUUAGCCGUAUGUCUUAGCACCCAACCGUGCAUUAUAUCCAAUACAAAUGUACGCCGAACUUCGUGUUAAGAAUUUCAAUUUCAU
......((-----....)).(....(((((((((.....((((((((............))))))))..(.....))))))))))....)........ ( -16.90)
>DroSec_CAF1 58257 92 - 1
UAUAUUGC-----U-UAGCCGUAUGUCUUAGCACCCAGCCGUGCAUUAUAUCCAAUACAAAUGUACGCCGAACUUCGUGUUAAGAUUUUCAAUUUCAU
........-----.-.....(...((((((((((...(.((((((((............)))))))).)(.....)))))))))))...)........ ( -18.70)
>DroSim_CAF1 60041 92 - 1
UAUUUUGC-----U-UAGCCGUAUGUCUUAGCACCCAGCCGUGCAUUAUAUCCAAUACAAAUGUACGCCGAACUUCGUGUUAAGAUUUUCAAUUUCAU
........-----.-.....(...((((((((((...(.((((((((............)))))))).)(.....)))))))))))...)........ ( -18.70)
>DroEre_CAF1 53547 93 - 1
UAUUUUGC-----UUUAGCCGUAUGUCUUAGCACCCAACCGUACAUUAUAUCCAAUACAAAUGUACGUGAAACUUCGUGUUAAGAAUUUCAAUUUCAU
......((-----....)).(....(((((((((.....((((((((............)))))))).((....)))))))))))....)........ ( -17.40)
>DroYak_CAF1 78456 93 - 1
UAUUUUGC-----UUUAGCCGUAUGUCUUAGCAUCCAACCGUACAUUAUAUCCAAUACAAAUGUACGUCAAACUUCGUGUUAAGAAUUUCAAUUUCAU
......((-----....)).(....(((((((((.....((((((((............)))))))).........)))))))))....)........ ( -14.84)
>DroAna_CAF1 48981 85 - 1
CAUUUUAUACAUGUUUUGCUG-------UAGCACCCACU-UUG---UCUAUGCAAUCUAGCCGUAGAUCCAACUCCAUAUGAAGAAUUUCCA--UCAU
.........(((((..(((..-------..)))......-..(---(((((((......).)))))))........)))))...........--.... (  -9.80)
>consensus
UAUUUUGC_____UUUAGCCGUAUGUCUUAGCACCCAACCGUGCAUUAUAUCCAAUACAAAUGUACGCCGAACUUCGUGUUAAGAAUUUCAAUUUCAU
.........................(((((((((.....((((((((............)))))))).........)))))))))............. ( -9.99 = -10.91 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:20 2006