Locus 7600

Sequence ID 3L_DroMel_CAF1
Location 20,446,973 – 20,447,078
Length 105
Max. P 0.612792
window12349

overview

Window 9

Location 20,446,973 – 20,447,078
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 82.67
Mean single sequence MFE -36.50
Consensus MFE -22.74
Energy contribution -23.05
Covariance contribution 0.31
Combinations/Pair 1.30
Mean z-score -2.17
Structure conservation index 0.62
SVM decision value 0.16
SVM RNA-class probability 0.612792
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20446973 105 - 23771897
CGAAUCCUAUUAUGGCAUCUUCAUGGGGAGACGGCUCUGUGAUGCCAUUUGGGCUAACAACCGCCUUUUUCCAAAGCUUCAGAAUGAAAAGCUUCUGGGGCUGCA
..............((.......(((..(((.(((..(((...(((.....)))..)))...))))))..))).((((((((((........)))))))))))). ( -33.50)
>DroPse_CAF1 46055 105 - 1
CAAACCCUAUGAUGGCAUCCUCCAACGGAGUGGGUUCGGUGCUGCCGCUUGCAUUGAUGGCAGCCUUCUUCCACAGCUUCAGAAUGAACAGUUUCUGGGGCUGCA
..............((.(((......)))(((((...((.((((((((.......).)))))))))...)))))((((((((((........)))))))))))). ( -37.60)
>DroSim_CAF1 58295 105 - 1
CGAAUCCUAUUAUGGCAUCUUCAUGGGGCGAAGGCUCUGUGAUGCCACUUGGGCUAACAACCGCCUUUUUCCACAGUUUCAGAAUGAAUAGCUUCUGGGGCUGCA
.(((........(((((...(((((((((....))))))))))))))...((((........))))..)))..((((..(((((........)))))..)))).. ( -38.00)
>DroEre_CAF1 51877 105 - 1
CGAAUCCUAUUAUGGCAUCUUCAUGGGGCGAAGGCUCUGUGGUGCCGUUUGGGCUAACAGUUGCCUUCUUCCACAGCUUUAGAAUGAAAAGCUUCUGGGGCUGCA
.((..((......))..))....(((((.((((((.((((...(((.....)))..))))..)))))))))))(((((((((((........))))))))))).. ( -38.80)
>DroYak_CAF1 76716 105 - 1
CAAAUCCUAUUAUGGCAUCUUCAUGCGGUGAAGGUUCUGUGAUGCCGCUUUGGGUAACAACUGCCUUCUUCCACAGCUUUAGAAUGAAAAGCUUCUGGGGCUGCA
..............((((....))))((.((((((....((.((((......)))).))...))))))..)).(((((((((((........))))))))))).. ( -32.50)
>DroPer_CAF1 46138 105 - 1
CAAACCCUAUGAUGGCAUCCUCCAACGGAGUGGGUUCGGUGCUGCCGCUUGCAUUGAUGGCAGCCUUCUUCCACAGCUUCAGAAUGAAGAGUUUCUGAGGCUGCA
..............((.(((......)))(((((...((.((((((((.......).)))))))))...)))))((((((((((........)))))))))))). ( -38.60)
>consensus
CAAAUCCUAUUAUGGCAUCUUCAUGCGGAGAAGGCUCUGUGAUGCCGCUUGGGCUAACAACAGCCUUCUUCCACAGCUUCAGAAUGAAAAGCUUCUGGGGCUGCA
.....((......))...........((.((((((..(((...(((.....)))..)))...))))))..)).(((((((((((........))))))))))).. (-22.74 = -23.05 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:18 2006