| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 291,408 – 291,510 |
| Length | 102 |
| Max. P | 0.802521 |
| Location | 291,408 – 291,510 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.01 |
| Mean single sequence MFE | -39.77 |
| Consensus MFE | -24.01 |
| Energy contribution | -22.46 |
| Covariance contribution | -1.55 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.802521 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 291408 102 - 23771897 CCAACAUCUGAGCUGCAGUCGAACUUCAAGCUGCAGUAGCAGUCAGCAAGGCACAAGUUGCCGCCGAAAAAAAGGAGCAGA------UGUAGAUGGCG---GCUGCGGGGA ......((((((((((.(((..((.((..(((((....)))))..((..((((.....)))).((........)).)).))------.)).))).)))---))).)))).. ( -33.30) >DroVir_CAF1 6392 102 - 1 UCA------GAGCUGCAGCCGCACUUCCAGCUGUAGUAGCACUCAUCAUGGAUCUAGUUGCCGCCGUAAAAAGGAUACUGAAUUGCAUGCAGAGGGUG---GCUGUGGCGA ...------..((..(((((((.((((..((((((((........(((...((((..((((....))))...))))..))))))))).)).)))))))---))))..)).. ( -35.20) >DroPse_CAF1 2327 105 - 1 CCAGCACCUGAGCUGCAGCCGCACCUCCAGCUGCAGCAGCAGCCACCAGAGCUCAAGCUGCCGCCGAAAAAAGGCCGCCGA------UGCAGACGGCGGGGGCUGCGGCGA ...((......((((((((.(......).)))))))).((((((.((..(((....)))...(((.......)))(((((.------......))))))))))))).)).. ( -48.10) >DroEre_CAF1 1206 102 - 1 CCAACAUCUGAGCUGCAGUCGAACUUCAAGCUGCAGUAGUAGUCAGCAGGGCACAAGCUGCCGCCGAAAAAAAGGAGCAGA------UGUGGACGGCG---CUUGUGGAGA ((.....((((((((((((..........)))))))).....))))...))(((((((.(((((((...............------..))).)))))---)))))).... ( -33.13) >DroYak_CAF1 2205 102 - 1 CCAACAUCUGAGCUGCAGUCGCACUUCCAGCUGCAGUAGUAGUCAGCAGGGCACUAGCUGCCGCCGGAAAAAAGGAGCAGA------AGCUGAUGGCG---GCUGCGGGGA ............((((((((((..((((.((.((((((((.(((.....)))))).))))).)).))))......(((...------.)))....)))---)))))))... ( -40.80) >DroPer_CAF1 2269 105 - 1 CCAGCACCUGAGCUGCAGCCGCACCUCCAGCUGCAGCAGCAGCCACCAGAGCUCAAGCUGCCGCCGAAAAAAGGCCGCCGA------UGCAGACGGCGGGGGCUGCGGCGA ...((......((((((((.(......).)))))))).((((((.((..(((....)))...(((.......)))(((((.------......))))))))))))).)).. ( -48.10) >consensus CCAACAUCUGAGCUGCAGCCGCACUUCCAGCUGCAGUAGCAGUCAGCAGGGCACAAGCUGCCGCCGAAAAAAAGGAGCAGA______UGCAGACGGCG___GCUGCGGCGA ((.........((((((((..........)))))))).(((((......(((....)))..(((((...........................)))))...)))))))... (-24.01 = -22.46 + -1.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:42 2006