Locus 7597

Sequence ID 3L_DroMel_CAF1
Location 20,439,184 – 20,439,304
Length 120
Max. P 0.754691
window12343

overview

Window 3

Location 20,439,184 – 20,439,304
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.42
Mean single sequence MFE -37.82
Consensus MFE -31.21
Energy contribution -30.57
Covariance contribution -0.64
Combinations/Pair 1.26
Mean z-score -1.55
Structure conservation index 0.83
SVM decision value 0.48
SVM RNA-class probability 0.754691
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20439184 120 + 23771897
ACCCAUCAUUGGAUGUACUGGUUAAGCAGUAUCUUGGCCGCACUGGCAACAAUUAUACCCGCUGCCAAUAAUGCGGUGGCUUCCAUCUACGCCAGUCCCGAUAAUCGGGGUGCUGUCCUG
..........((((((((.(((((((......)))))))..((((((...........(((((((.......)))))))...........))))))((((.....)))))))).)))).. ( -40.45)
>DroSec_CAF1 48887 120 + 1
ACCCAUCAUUGGAUGUACUGGUUAAGCAGUAUCUUGGCCGCACUGGCAACAAUUAUACCCGCUGCCAAUAAUGCGGUGGCUUCCAUCUACGCCAGUCCCGAGAAUCGGGGUGCUGUCCUG
..........((((((((.(((((((......)))))))..((((((...........(((((((.......)))))))...........))))))((((.....)))))))).)))).. ( -40.45)
>DroSim_CAF1 50626 120 + 1
ACCCAUCAUUGGAUGUACUGGUUAAGCAGUAUCUUGGCCGCACUGGCAACAAUUAUUCCCGCUGCCAAUAACGCGGUGGCUUCCAUCUACGCCAGUCCCGAGAAUCGGGGUGCUGUCCUG
..........((((((((.(((((((......)))))))..((((((...........(((((((.......)))))))...........))))))((((.....)))))))).)))).. ( -40.55)
>DroEre_CAF1 43909 120 + 1
ACUCAUCAUUGGAUGUACUGGCUAAGCUGUAUUUUCGCCGCCUUUGCAACAAUAAUUCUUAUUGCCUGUAAUGCGGUUGCUUCCAUCUAUGCCAGUCCCGAAAAUCAAGGGGCUGUACUG
...(((...((((.(((..(((...)))........(((((..(((((.(((((.....)))))..))))).)))))))).))))...))).(((((((.........)))))))..... ( -32.00)
>DroYak_CAF1 68830 120 + 1
ACUCAUCAUUGGAUGUACUGGUUAAGCAGUAUUUUGGCCGCCUUGGCAACAAUUAUUCCCACUGCCACUAAUGCGGUGGCUUCCAUCUAUGCCAAUCCCGAAAAUCAGGGGGCUGUACUG
..............((((.(((((((......)))))))(((((((((..........(((((((.......)))))))..........)))))).(((........)))))).)))).. ( -35.65)
>consensus
ACCCAUCAUUGGAUGUACUGGUUAAGCAGUAUCUUGGCCGCACUGGCAACAAUUAUUCCCGCUGCCAAUAAUGCGGUGGCUUCCAUCUACGCCAGUCCCGAAAAUCGGGGUGCUGUCCUG
...((((....))))....(((((((......)))))))((((((((...........(((((((.......)))))))...........)))))(((((.....))))))))....... (-31.21 = -30.57 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:12 2006