Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,438,482 – 20,438,602 |
Length | 120 |
Max. P | 0.811449 |
Location | 20,438,482 – 20,438,602 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.50 |
Mean single sequence MFE | -36.40 |
Consensus MFE | -27.64 |
Energy contribution | -28.76 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.09 |
Mean z-score | -1.95 |
Structure conservation index | 0.76 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811449 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20438482 120 + 23771897 GCCAGUUUUGGGGCAGGAAUAGCCUUUUCUCCAUCGUUGGGGAAUUACUUGAUGAAAUCGUACGGGUCCGCAUCAGUUAUUCUGAUAGCCACCAUCACUGGGAUGAUCAAUAUCUUGUUU .(((((..((((((.((((((((...(((((((....))))))).....(((((..(((.....)))...)))))))))))))....))).)))..)))))................... ( -38.80) >DroSec_CAF1 48185 120 + 1 GCCAGUUUUGGGGCUGGAAUAGCCUUUUCGCCAUCGUUGGGGAAUUAUUUGAUGAAAUCGUAUGGGUCUGCAUCCGUUAUUUUGAUAGCCACCAUCACUGGCAUGAUGAAUAUCUUGUUU ((((((..(((((((((((((((...(((.(((....))).)))......((((..(((.....)))...)))).)))))))...))))).)))..)))))).................. ( -37.40) >DroSim_CAF1 49924 120 + 1 GCCAGUUUUGGGGCUGGAAUAGCAUUUUCGCCAUCGUUGGGGAAUUAUUUGAUGAAAUCGUACGGGUCUGCAUCAGUUAUUUUGAUAGCCACCAUCACUGGCAUGAUGAAUAUCUUGUUU ((((((..(((((((((((((((...(((.(((....))).))).....(((((..(((.....)))...))))))))))))...))))).)))..)))))).................. ( -40.00) >DroEre_CAF1 43192 120 + 1 GCCAGUUACGGCGCUGGAAUAGCUUUUUCGCCAUCGUUGGGGAACUAUUUGAUGAAAUUGUACGGGUCUGGAUCAGUUGUUUUGAUUGCUGCCAUCACUGGCUUGAUCAAUAUCUUGUUU ((((((...(((((.(((((((((..((((((.((((..((......))..)))).........)))..)))..)))))))))....)).)))...)))))).................. ( -29.90) >DroYak_CAF1 68113 120 + 1 GCCAGUUUUGGUGCUGGAAUAGCUUUUUCCCCAUCGUUGGGGAACUAUUUGAUGAAAUCGUUCGGGUCCGGAUCAGUUAUUUUGAUUGCUACCAUCACUGGGUUGAUCAAUAUCUUGUUU .(((((..((((((.(((((((((..(((((((....)))))))...............(((((....))))).)))))))))....)).))))..)))))................... ( -35.90) >consensus GCCAGUUUUGGGGCUGGAAUAGCCUUUUCGCCAUCGUUGGGGAAUUAUUUGAUGAAAUCGUACGGGUCUGCAUCAGUUAUUUUGAUAGCCACCAUCACUGGCAUGAUCAAUAUCUUGUUU ((((((..((((((.((((((((...(((.(((....))).))).....(((((..(((.....)))...)))))))))))))....))).)))..)))))).................. (-27.64 = -28.76 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:11 2006