Locus 7594

Sequence ID 3L_DroMel_CAF1
Location 20,433,353 – 20,433,473
Length 120
Max. P 0.604125
window12339

overview

Window 9

Location 20,433,353 – 20,433,473
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 91.64
Mean single sequence MFE -25.43
Consensus MFE -21.43
Energy contribution -22.10
Covariance contribution 0.67
Combinations/Pair 1.09
Mean z-score -1.98
Structure conservation index 0.84
SVM decision value 0.14
SVM RNA-class probability 0.604125
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20433353 120 + 23771897
CCUUAUGGUUCUAUUCUCACUAACAAGAGAGGGAAAUGUUUGUUAUUAUUAAUAGCUUGGAUGAAUAAUGUUAAUAUAUUUGUGAAAAUUUCAGCUAUUUUGAAAACAAACUUUUAAAUU
((....))((((.(((((........)))))))))..(((((((.(((..(((((((..(((..(((((((....))).))))....)))..))))))).))).)))))))......... ( -22.90)
>DroSec_CAF1 43518 119 + 1
CCUUAUGGUUCCAUUCUCACUAACAAGAGAGGGAAAUGUUUGUUUGUAUUAAUAGCUGGGAUGAAUAAUGUUAAUAUAU-CGUGCAAAUUUCAGCUAUUUUCAAAACAAACUUUUUAAUU
((....))((((.(((((........)))))))))..((((((((.....((((((((..((..(..((((....))))-..)....))..))))))))....))))))))......... ( -32.10)
>DroSim_CAF1 44846 119 + 1
CCUUAUGGUUCUGUUCUCACCAACAAGAGAGGGAAAUUGUUGUUAUUAUUAAUAGCUGAGAUGAAUAAUGUUAAUAUAU-CGUGCAAAUUUCAGCAAUUUUCAAAACAAACUUUUUAAUU
......((((.(((((((........)))).(((((((..(((((....)))))((((((((..(..((((....))))-..)....)))))))))))))))...)))))))........ ( -21.30)
>consensus
CCUUAUGGUUCUAUUCUCACUAACAAGAGAGGGAAAUGUUUGUUAUUAUUAAUAGCUGGGAUGAAUAAUGUUAAUAUAU_CGUGCAAAUUUCAGCUAUUUUCAAAACAAACUUUUUAAUU
((....))((((.(((((........)))))))))..(((((((......((((((((((((.....(((..........)))....)))))))))))).....)))))))......... (-21.43 = -22.10 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:08 2006