| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,259,481 – 2,259,576 |
| Length | 95 |
| Max. P | 0.680421 |
| Location | 2,259,481 – 2,259,576 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 91.30 |
| Mean single sequence MFE | -25.08 |
| Consensus MFE | -20.96 |
| Energy contribution | -21.12 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.680421 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2259481 95 - 23771897 UGAUUGA----AGGAGUGAAAGAAAAAUCUCAGCAUCCCCGGGAUUUCCCUGCAGAAUUCCUGGGCCAUUUCGCCAUUUCCAUCACCAUAAUUGCCCCU ((((.((----((..((((((((......))......(((((((.(((......))).)))))))...))))))..)))).)))).............. ( -25.40) >DroSec_CAF1 9366 95 - 1 UGAUUGA----AGGAGUGAGAAAAAAAUCUCAGCAUCCCCGGGAUUUCCCUGCAGAAUUCCUGGGCCAUUUCGCCAUUUCCAUCACCGUAAUUGCCCCU ....(((----.(((((((((......))))).....(((((((.(((......))).)))))))............)))).))).............. ( -24.20) >DroSim_CAF1 9453 95 - 1 UGAUUGA----AGGAGUGAAGGAAAAAUCUCAGCAUCCCCGGGAUUUCCCUGCAGAAUUCCUGGGCCAUUUCGCCAUUUCCAUCACCGUAAUUGCCCCU ((((.((----((..((((((((......))......(((((((.(((......))).)))))))...))))))..)))).)))).............. ( -24.90) >DroEre_CAF1 10325 95 - 1 UGAUUGA----AAGAGUGGGAGAAGAAUCUCAGCAUCCCUGGGAUUUCCCCGAAGAAUUCCUGGGCCAUUUCGCCAUUUCCAUCACCGUAAUUGCCCCU ((((.((----((((((((((((....))))......((..(((.(((......))).)))..)))))))).....)))).)))).............. ( -24.20) >DroYak_CAF1 10030 99 - 1 UGAUUGGAAGGAAGAGUGAGAGAAAAAUCUCAGUAUACCCGGGAUUUCCCUGCAGAAUUCCCAGGCCAUUUUGCCAUUUCCAUCACCGUAAUUGCCCCU ((((.((((((...(.(((((......))))).)....))((((.(((......))).)))).(((......)))..)))))))).............. ( -26.70) >consensus UGAUUGA____AGGAGUGAGAGAAAAAUCUCAGCAUCCCCGGGAUUUCCCUGCAGAAUUCCUGGGCCAUUUCGCCAUUUCCAUCACCGUAAUUGCCCCU ((((.((.....((((((.((((....))))......(((((((.(((......))).))))))).))))))......)).)))).............. (-20.96 = -21.12 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:34 2006