Locus 7587

Sequence ID 3L_DroMel_CAF1
Location 20,388,331 – 20,388,430
Length 99
Max. P 0.677069
window12326

overview

Window 6

Location 20,388,331 – 20,388,430
Length 99
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 83.40
Mean single sequence MFE -11.80
Consensus MFE -10.22
Energy contribution -10.22
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 0.87
SVM decision value 0.30
SVM RNA-class probability 0.677069
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20388331 99 + 23771897
AA-ACUGCCUUCUUGAUGACAACUUCAUACCCAACUCAGAAAAACUAUGUUGAAAUCUUUUUAACAUGCAUCACCAUCUGAUUAA-------AAAUAUGCAU---AUUUA
..-..(((.......((((.....)))).......(((((.....(((((((((.....)))))))))........)))))....-------......))).---..... ( -11.42)
>DroVir_CAF1 1821 107 + 1
AAAUAUUUUUUACUGAUGACAACUUCAUACACAACUCAGAACAAUUAUGUUGAAAUCUGUUUAACAUGCAUCACCAUCUGAUU---UUGACAAACAUUAUUUUUACCUAA
.............((((((.....)))).))(((.(((((.....(((((((((.....)))))))))........)))))..---)))..................... ( -10.42)
>DroSec_CAF1 2836 100 + 1
UA-AAUCCUUUCUUGAUGACAACUUCAUACCAAACUCAGAGAAACUAUGUUGAAAUCUUUUUAACAUGCAUCACCAUCUGAUUAA-------AAAUUUACAUU--AUUUA
..-............((((.....)))).......(((((.....(((((((((.....)))))))))........)))))....-------...........--..... ( -10.62)
>DroSim_CAF1 6865 99 + 1
UA-ACUCCUUUCUUGAUGACAACUUCAUACCCAACUCAGAGAAACUAUGUUGAAAUCUUUUUAACAUGCAUCACCAUCUGAUUAA-------AAAUAUACAU---AUUUA
..-............((((.....)))).......(((((.....(((((((((.....)))))))))........)))))....-------..........---..... ( -10.62)
>DroEre_CAF1 2800 100 + 1
AA-ACUACUUUUUUGAUGACAACUUCAUUCUCAACUCAGAGAAACUAUGUUGAAAUCUUUUUAACAUGCAUCACCAUCUGAAUAAA------AAAUAUACAA---AUGUA
..-..........(((((.........(((((......)))))..(((((((((.....)))))))))))))).(((.((.(((..------...))).)).---))).. ( -14.90)
>DroYak_CAF1 19448 100 + 1
AA-ACUGCUUUUUUGAUGACAACUUCAUACCAAACUCAGAGAAACUAUGUUGAAAUCUUUUUAACAUGCAUCACCAUCUGAAUAAA------AAAUAUACAA---AACGA
..-.......(((((((((.....)))).......(((((.....(((((((((.....)))))))))........))))).....------.......)))---))... ( -12.82)
>consensus
AA_ACUCCUUUCUUGAUGACAACUUCAUACCCAACUCAGAGAAACUAUGUUGAAAUCUUUUUAACAUGCAUCACCAUCUGAUUAA_______AAAUAUACAU___AUUUA
...............((((.....)))).......(((((.....(((((((((.....)))))))))........)))))............................. (-10.22 = -10.22 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:55 2006