Locus 7585

Sequence ID 3L_DroMel_CAF1
Location 20,382,724 – 20,382,843
Length 119
Max. P 0.638141
window12323

overview

Window 3

Location 20,382,724 – 20,382,843
Length 119
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 92.20
Mean single sequence MFE -33.07
Consensus MFE -28.71
Energy contribution -28.60
Covariance contribution -0.11
Combinations/Pair 1.06
Mean z-score -1.93
Structure conservation index 0.87
SVM decision value 0.22
SVM RNA-class probability 0.638141
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20382724 119 - 23771897
UGUUGUUGCUGGUGCGUGUCGCAGAUAUUUAUGCAAUUAUAAAAUUAUUACCUAAUGUAAACAGACACGGACAGCGUGUAAUAUGUUGGGUCAAUUCAGUGACUG-CCGCCCUGGCAAUU
....(((((..(.(((.(((((.....((((((....))))))......((((((((((.....(((((.....)))))..)))))))))).......)))))..-.))).)..))))). ( -35.10)
>DroSim_CAF1 211 120 - 1
UGUUGUUGCUGGUGCGUGUCGCAGAUAUUUAUGCAAUUAUAAAAUUAUUAACUAAUGUAAACAGACACGGACAGCGUGUAAUAUGUUGGGUCAAUUCAGUGACUGACUGCCCCGGCAAUU
....((((((((.(((.((((((........))).................((((((((.....(((((.....)))))..))))))))((((......)))).)))))).)))))))). ( -34.40)
>DroYak_CAF1 3092 112 - 1
----GUUGAUGGUGCGUGUCGCAGAUAUUUAUGCAAUUAUAAAAUUAUUAGUUAAUGUAAACAGACACGGACAGCGUGUAAUAUGUUGGGUCAAUUCAGUGACU----GCCCUGGCAGUU
----((((((....(((((((((........)))................(((......))).))))))..(((((((...))))))).)))))).....((((----((....)))))) ( -29.70)
>consensus
UGUUGUUGCUGGUGCGUGUCGCAGAUAUUUAUGCAAUUAUAAAAUUAUUAACUAAUGUAAACAGACACGGACAGCGUGUAAUAUGUUGGGUCAAUUCAGUGACUG_C_GCCCUGGCAAUU
.....(((((((.((((((((((........)))..........((((........))))...)))))...(((((((...)))))))(((((......)))))....)).))))))).. (-28.71 = -28.60 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:52 2006