| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,382,271 – 20,382,367 |
| Length | 96 |
| Max. P | 0.867521 |
| Location | 20,382,271 – 20,382,367 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 94.44 |
| Mean single sequence MFE | -28.07 |
| Consensus MFE | -23.91 |
| Energy contribution | -23.73 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.867521 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20382271 96 + 23771897 UUAGUUUGCCAUAGGCUAUUCCCACUACCGGCAACAAAUCCAGUCGGUAAGGAACGUGCCUGAAAUAACAAUGGAAACACCUGUUCUGGCGACUGG .(((((.(((((((((..((((...(((((((..........))))))).))))...)))))....((((.((....))..)))).))))))))). ( -32.30) >DroSec_CAF1 10414 96 + 1 UUAGUAUGCCAUAGGCAAUUCCCACUACCGGCAACAAAUCCAGUCGAUGAGGAACGUGCCUGAAAUAACAAUGGAAACACCUGUUCUGGCGACUGG .((((.(((((((((((.((((((....((((..........)))).)).))))..))))))....((((.((....))..)))).))))))))). ( -27.80) >DroSim_CAF1 10612 96 + 1 UUAGUAUGCCAUAGGCAAUUCCCACUACCGGCAACAAAUCCAGUCGAUAAGGAACGUGCCUGAAAUCACAAUGGAAACACCUGUUCUGGCGACUGG ...((.((((.(((..........)))..))))))....(((((((....((((((((........)))..((....))...)))))..))))))) ( -28.00) >DroEre_CAF1 10376 96 + 1 UUAGUAUGCCAUAGGCCAUUUCCACUACCGGCAAAAAAUCCAGUUGAUAAGGAACGUGUCUGAAAUAACAAGGGAAACACCUGUUCUGGCGACUGG ......((((.(((..........)))..))))......(((((((....(((((.(((........)))(((......))))))))..))))))) ( -24.20) >consensus UUAGUAUGCCAUAGGCAAUUCCCACUACCGGCAACAAAUCCAGUCGAUAAGGAACGUGCCUGAAAUAACAAUGGAAACACCUGUUCUGGCGACUGG ......((((.(((..........)))..))))......(((((((....(((((((..........))...(....)....)))))..))))))) (-23.91 = -23.73 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:51 2006