| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,372,015 – 20,372,116 |
| Length | 101 |
| Max. P | 0.575728 |
| Location | 20,372,015 – 20,372,116 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 77.10 |
| Mean single sequence MFE | -17.62 |
| Consensus MFE | -11.31 |
| Energy contribution | -10.84 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575728 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20372015 101 - 23771897 CCUUGUUCACGGCCAUUGAAAUUGAACAAGCCAAGCGAGGAAACUUGUGAAUCAAAUGUGAUCAAAUUGAGAACUAACAAAAUCAAUAAUAAAUGAAAUG-G ..(((.(((((((..(((........))))))..(((((....))))).........)))).)))(((((............))))).............-. ( -19.10) >DroSec_CAF1 237 101 - 1 CCUUGUUCACGGCCAUUGAAAUUGAACAAGCCAAGCGAGGAAACUUGUAAAUCAAUUGUGAUCGAAUAGAGAUUUAACAAAAUCAAAAAUAAAUGAAAUG-G .((((((((.............))))))))(((.(((((....)))))...(((.((((..((.....))(((((....)))))....)))).)))..))-) ( -20.32) >DroEre_CAF1 237 100 - 1 CCUUGUUCACGGCCAUUGAAAUCGAACAAGCCAAGCGAGGAAACUUGUGAAUCAAAUGUGAUCA-AUUGAGAUUUAACAAAAGUAAUAAUAAAUGAAAAU-G ..(((.(((((((..(((....)))....)))..(((((....))))).........)))).))-)..................................-. ( -17.80) >DroWil_CAF1 1824 87 - 1 CCUUAUUUACGGCCAUUGAAAUUGAACAGGCCAAACGUGGAAAUUUGUAAAUUAUU-------AU-------UUCGACGAUAUGCAAAAUAAAUUGAUAU-A ..((((((..((((..............))))...(((.(((((............-------))-------))).))).......))))))........-. ( -14.64) >DroYak_CAF1 237 100 - 1 CCUUGUUCACGGCCAUUGAAAUUGAACAAGCCAAGCGAGGAAACUUGUGAAUCAAAUGUGAUUA-ACUGAGAUUUAACAAAAUCAAUAAUAAAUGAAAUG-G .((((((((.............))))))))(((.(((((....))))).(((((....))))).-.....(((((....)))))..............))-) ( -19.52) >DroAna_CAF1 251 92 - 1 CUCUGUUCACGGCCAUUGAAAUUGAGCAGGCCAAACGUGGCAACUUGUAAACUAAA------CA-AUUACAAUU---CAAUAUGAAUAAUAAAUGGAAUGCG ..(((((((.............)))))))((((....))))...............------((-.(((..(((---(.....))))..))).))....... ( -14.32) >consensus CCUUGUUCACGGCCAUUGAAAUUGAACAAGCCAAGCGAGGAAACUUGUAAAUCAAAUGUGAUCA_AUUGAGAUUUAACAAAAUCAAUAAUAAAUGAAAUG_G .((((((((.............))))))))....(((((....)))))...................................................... (-11.31 = -10.84 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:46 2006