Locus 7579

Sequence ID 3L_DroMel_CAF1
Location 20,368,701 – 20,368,821
Length 120
Max. P 0.790909
window12314

overview

Window 4

Location 20,368,701 – 20,368,821
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.83
Mean single sequence MFE -31.12
Consensus MFE -23.49
Energy contribution -22.61
Covariance contribution -0.88
Combinations/Pair 1.44
Mean z-score -1.64
Structure conservation index 0.75
SVM decision value 0.59
SVM RNA-class probability 0.790909
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20368701 120 + 23771897
ACCACAAUCGCUUGCUUUGUGGCCAUCCUCAUUGGACUCUGCCUCACUCUUCUGCUUCUGGCCAUUUGGCGCAAGGCGCUACCCGCCCUGCCCAUCUCAAUAACGUUCGGAUUGAUAUUU
....(((((....(((..((((((((((.....)))....((...........))...)))))))..)))(((.((((.....)))).)))..................)))))...... ( -33.40)
>DroVir_CAF1 2816 120 + 1
ACAACAAUUGCCUGCUUUGUGGCCAUAUUGAUUGGCCUUUGCCUGACGCUACUGCUCUUGGCCGUUUGGCGCAAGGCACUGCCAGCCCUGCCCAUUUCAAUAACCUUUGGCCUGAUUUUU
...((((..(....).))))(((((((((((.(((.....(((.(((((((.......))).)))).)))(((.(((.......))).))))))..)))))).....)))))........ ( -33.40)
>DroGri_CAF1 81 120 + 1
ACAACAAUUGCCUGCUUUGUGGCCAUAUUGAUUGGCCUUUGCCUGACGCUGCUGCUCUUGGCCAUUUGGCGCAAGGCACUGCCAGCAUUGCCCAUUUCCAUUACAUUCGGCCUAAUAUUU
.........(((.(((..(((((((........(((....))).((.((....)))).)))))))..)))....((((.((....)).))))................)))......... ( -33.60)
>DroWil_CAF1 2667 120 + 1
ACAACCAUAGCUUGCUUUGUGGCUAUAUUGAUUGGUCUAUGCUUGACAUUGCUACUCUUGGCCAUUUGGCGUAAGGCUUUACCAGCCUUACCUAUUUCUAUAACAUUCGGCUUGAUUUUU
.(((((.......(((..(((((((....((.((((..(((.....))).)))).)).)))))))..)))((((((((.....)))))))).................)).)))...... ( -33.60)
>DroMoj_CAF1 81 120 + 1
ACUACAAUUGCCUGCUUCGUGGCCAUAUUGAUUGGCCUUUGCCUGACCCUGCUGCUAUUGGCCAUUUGGCGCAAGGCCUUGCCCGCUCUGCCUAUUUCUAUAACAUUUGGUCUGAUCUUU
.........(((.(((..(((((((.......((((....((........)).)))).)))))))..)))(((..((.......))..))).................)))......... ( -26.10)
>DroAna_CAF1 81 120 + 1
ACCACUAUCGCCUGCUUCGUAGCCAUCCUGAUCGGACUUUGCCUCACCCUCCUGCUCCUGGCUAUUUGGCGCAAGGCCCUGCCUGCUCUGCCGAUCUCAAUCACAUUUGGUUUGAUAUUC
.....(((((((.(((....)))......((((((.....(((.......((.......))......)))(((.(((...))))))....))))))............)))..))))... ( -26.62)
>consensus
ACAACAAUUGCCUGCUUUGUGGCCAUAUUGAUUGGCCUUUGCCUGACCCUGCUGCUCUUGGCCAUUUGGCGCAAGGCACUGCCAGCCCUGCCCAUUUCAAUAACAUUCGGCCUGAUAUUU
.........(((.(((..(((((((....((.((((..............)))).)).)))))))..)))(((.(((.......))).))).................)))......... (-23.49 = -22.61 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:44 2006