Locus 7578

Sequence ID 3L_DroMel_CAF1
Location 20,367,768 – 20,367,888
Length 120
Max. P 0.575139
window12313

overview

Window 3

Location 20,367,768 – 20,367,888
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 84.17
Mean single sequence MFE -28.13
Consensus MFE -23.99
Energy contribution -23.33
Covariance contribution -0.65
Combinations/Pair 1.21
Mean z-score -1.40
Structure conservation index 0.85
SVM decision value 0.08
SVM RNA-class probability 0.575139
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20367768 120 + 23771897
UUAUAGAUCUUAUUGCUGUCCUUUCGCCAAGAGGACCCCUCCGCAUUCUGGUGGAAACGGCUCAGGAGCGAAAUGAGCAAAUCUUCCCCGCUCUGAUUUAUUCAUGUAAUAAUCAUCCAU
.....(((.(((((((.(((((((.....))))))).....(((.((((((((....).)).))))))))..(((((.(((((...........))))).))))))))))))..)))... ( -29.90)
>DroYak_CAF1 21520 120 + 1
UUACAGAUCUCAUUGCUGUCCUCUCUCCAAGAGGACCCCUCCGCAUACUCGUGGAAACGGCCCAGGAGCGAAAUGAGCAAAUCUUCCCCGCUCUGAUUUACUCAUGUAAUAAUCAUCAAU
((((........((((((((((((.....)))))))((.(((((......)))))...))......))))).(((((.(((((...........))))).)))))))))........... ( -30.40)
>DroAna_CAF1 9024 118 + 1
--ACAGAUCUCAUAGCUGUCCUUUCGCCAAGAGGACCUCUACGCAUCCUGGUAGAAACGGCUCAAGAGCGAAACGAGCAAAUAUUUCCUGCUUUGAUCUACUCAUGUAACUAAAAUACCU
--..(((((....(((.(((((((.....))))))).(((((........)))))....((((...........))))...........)))..)))))..................... ( -24.10)
>consensus
UUACAGAUCUCAUUGCUGUCCUUUCGCCAAGAGGACCCCUCCGCAUACUGGUGGAAACGGCUCAGGAGCGAAAUGAGCAAAUCUUCCCCGCUCUGAUUUACUCAUGUAAUAAUCAUCCAU
....(((((.....((((((((((.....)))))))...(((((......)))))...)))...((((((....(((......)))..)))))))))))..................... (-23.99 = -23.33 +  -0.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:42 2006