Locus 7575

Sequence ID 3L_DroMel_CAF1
Location 20,355,085 – 20,355,196
Length 111
Max. P 0.814365
window12306

overview

Window 6

Location 20,355,085 – 20,355,196
Length 111
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 70.09
Mean single sequence MFE -39.87
Consensus MFE -23.32
Energy contribution -23.67
Covariance contribution 0.35
Combinations/Pair 1.28
Mean z-score -1.55
Structure conservation index 0.58
SVM decision value 0.66
SVM RNA-class probability 0.814365
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20355085 111 - 23771897
GAUCAUUGGAUCCUGGAUAACAUCUUGGCCUGACUGUAGUAAC---------UGUCGUUGGGGGCAAGUAAGUUGCAGGCUGACACUGUGGGUCAGUUGAGCCAGGAUAACAUCUAGGCU
((((....))))((((((...((((((((..(((((.....((---------.((.((..(..((((.....))))...)..)))).))....)))))..))))))))...))))))... ( -37.70)
>DroEre_CAF1 24285 111 - 1
GAUCACUGGAUCCUGGAUAACAUCUUGGCGUAACCGUAGUAGU---------CGUCGUGGGUGGCAGGUAUGUUGCAGGCUGACACUGUGGGUCAGUUGAGCCAGGAUAACAUCUAGGCU
((((....))))((((((...((((((((....(((((((.((---------((((....(..(((....)))..).))).)))))))))).((....))))))))))...))))))... ( -39.70)
>DroAna_CAF1 24564 120 - 1
GAUCGUCUGAGCCGGGGUAGCACCUUGGCCUAGAGGUUGUUAUGAGAGAUUUAGAAGUCGGUGGAGAGUAUGUCGCUGGUUGGCAACUGGGAUCUCUUGAGCCUGGAUAGCACCUGGGCU
((((.((((.(((((((.....))))))).)))))))).....(((((((((...(..((((((........))))))..)(....)..))))))))).((((..(.......)..)))) ( -42.20)
>consensus
GAUCAUUGGAUCCUGGAUAACAUCUUGGCCUAACCGUAGUAAU_________AGUCGUCGGUGGCAAGUAUGUUGCAGGCUGACACUGUGGGUCAGUUGAGCCAGGAUAACAUCUAGGCU
...........(((((((...((((((((.((((((....................(((((..((((.....))))...)))))((.....)))))))).))))))))...))))))).. (-23.32 = -23.67 +   0.35)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:36 2006