Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,354,825 – 20,354,933 |
Length | 108 |
Max. P | 0.919473 |
Location | 20,354,825 – 20,354,933 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 68.21 |
Mean single sequence MFE | -32.93 |
Consensus MFE | -16.38 |
Energy contribution | -17.25 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.29 |
Mean z-score | -2.07 |
Structure conservation index | 0.50 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919473 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20354825 108 - 23771897 CAUCUAGCUUUCUGUGUAGUUAUAGGUAGCCGAGUUGUGAUUGGUUGAGUUGGUUGUGGGCAACUAGGAUCUGUAGAUCCUGGGUGGCAUCUGGGCUUGGGUGCAGUU ((.(((((((((((((....)))))).((((((.......))))))))))))).))....((.((((((((....)))))))).))((((((......)))))).... ( -34.50) >DroEre_CAF1 24058 99 - 1 CAUCUAG---------UAGUUGUAGGUAUCGGAGUCGUGAUUGGUUGAGUUGGUUGUGGACAUCUGGGAUCUGUAGAUCCUGGGUAGCAUCUGGGUUUGGGUGCAAUU .((((((---------...((((((((..((((.(((..((..(.....)..))..)))...))))..))))))))...)))))).((((((......)))))).... ( -29.40) >DroAna_CAF1 24328 96 - 1 CAUCGUGGUCUAGAUGUUGUCAAAGGUGUCC---------UUG---UAGUUGGUUGAGGACAGCUUGGGUCCGUUGAUCCGGGGUAACAUCUUGGCUUAGGCGCACUA ...(((((((.(((((((..(.(((.(((((---------(((---........)))))))).)))(((((....)))))..)..))))))).))))...)))..... ( -34.90) >consensus CAUCUAG_U_U___UGUAGUUAUAGGUAUCCGAGU_GUGAUUGGUUGAGUUGGUUGUGGACAACUAGGAUCUGUAGAUCCUGGGUAGCAUCUGGGCUUGGGUGCAAUU ..................(((........((((.(((........))).)))).....)))..((((((((....))))))))...((((((......)))))).... (-16.38 = -17.25 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:35 2006