Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,352,674 – 20,352,834 |
Length | 160 |
Max. P | 0.545403 |
Location | 20,352,674 – 20,352,794 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 66.81 |
Mean single sequence MFE | -41.05 |
Consensus MFE | -20.90 |
Energy contribution | -25.65 |
Covariance contribution | 4.75 |
Combinations/Pair | 1.28 |
Mean z-score | -1.47 |
Structure conservation index | 0.51 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545403 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20352674 120 - 23771897 GGGUCAGUUGAUCCUUGAGAACAUCUUGGCUGUGAUGUGGUAAUCGUUGGCCUUGUUCUGGGUUGACACUCUGGAUCUGUUGAUCCCGGGUAGCAACGUGGUCUCUUCGUAGUAAUGGAA (((((....)))))..((((.(((....(((..(((......)))((..((((......))))..))((((.(((((....))))).)))))))...))).))))(((((....))))). ( -39.10) >DroEre_CAF1 21853 120 - 1 GGGUCAGUGGAUCCUUGAUAACAUCUUGGCAGCGAUGUGGUAAUCGUUGGCCUUGUUCUCGGUUGACAGUCGGGAUCUGUUGAUCCCGGGUAACAACGUGGCCUCUUCGUAGUAAUGGGA ((((((.........(((.((((....(((((((((......)))))).))).)))).)))((((..(.((((((((....)))))))).)..)))).))))))..((.((....)).)) ( -41.30) >DroWil_CAF1 29224 111 - 1 GGAUCGUCUGAACCAGGAUAACAUCUUGGCUUUGGAGUAGU---------UCUAGGUUCUUGUGGACAUCGAGAAUCUGUUGACCCGGGAUAACACCUUGGCCUCGUGGUAGUUACGGGA ((((..((..(((((((((...))))))).))..))...))---------))((((((((((.......))))))))))....((((...(((((((.((....)).))).)))))))). ( -33.20) >DroAna_CAF1 22171 120 - 1 GGGUCAGGAGAUCCGGGGUAACACCUUGGUCUGGGUGUAGUCAAUGGAGCUCUAGUGACUGGUGAACAGGCAGGAUCAGGAGAUCCGGGGAAACACCUCGGCCGAGGUGUAGUAGCGGGC (((((....)))))......(((((((((((.((((((..((..((((.((((.(...(((.(.....).)))...).)))).))))..)).)))))).))))))))))).......... ( -50.60) >consensus GGGUCAGUUGAUCCUGGAUAACAUCUUGGCUGUGAUGUAGUAAUCGUUGGCCUAGUUCCUGGUGGACAGUCAGGAUCUGUUGAUCCCGGGUAACAACGUGGCCUCGUCGUAGUAACGGGA (((((....))))).............(((((((((((.......(((((((........)))))))((((.(((((....))))).)))).)))))))))))................. (-20.90 = -25.65 + 4.75)
Location | 20,352,714 – 20,352,834 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 59.33 |
Mean single sequence MFE | -33.50 |
Consensus MFE | -17.56 |
Energy contribution | -18.88 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.43 |
Mean z-score | -0.96 |
Structure conservation index | 0.52 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20352714 120 - 23771897 UCUUGUUGUUGGUGGAAGAUAAGUAGCAGGUUGACACUCCGGGUCAGUUGAUCCUUGAGAACAUCUUGGCUGUGAUGUGGUAAUCGUUGGCCUUGUUCUGGGUUGACACUCUGGAUCUGU .((((((((((........))).)))))))(((((.(....))))))..(((((..(((.(((((........))))).......((..((((......))))..)).))).)))))... ( -33.50) >DroEre_CAF1 21893 120 - 1 UCUUGUUGUUGGUGGAAGAUAAGUAGCAGGCUGACACUCAGGGUCAGUGGAUCCUUGAUAACAUCUUGGCAGCGAUGUGGUAAUCGUUGGCCUUGUUCUCGGUUGACAGUCGGGAUCUGU ((((((((((..(.((..(((((...((((.((....((((((((....))))).)))...)).)))).(((((((......)))))))..)))))..)).)..))))).)))))..... ( -37.60) >DroWil_CAF1 29264 109 - 1 --GAGUUGUUGGAGGGGGAUUUGUUUUAGGUUCGCACUCUGGAUCGUCUGAACCAGGAUAACAUCUUGGCUUUGGAGUAGU---------UCUAGGUUCUUGUGGACAUCGAGAAUCUGU --((....(..((((.(((((((...))))))).).)))..).)).((..(((((((((...))))))).))..)).....---------..((((((((((.......)))))))))). ( -31.90) >DroAna_CAF1 22211 93 - 1 ---------------------------AGGUUGACAUUCUGGGUCAGGAGAUCCGGGGUAACACCUUGGUCUGGGUGUAGUCAAUGGAGCUCUAGUGACUGGUGAACAGGCAGGAUCAGG ---------------------------..((((((((((((((((....)))))))))).((((((......)))))).))))))...(.(((.((..(((.....))))).))).)... ( -31.00) >consensus __UUGUUGUUGGUGGAAGAUAAGUAGCAGGUUGACACUCUGGGUCAGUUGAUCCUGGAUAACAUCUUGGCUGUGAUGUAGUAAUCGUUGGCCUAGUUCCUGGUGGACAGUCAGGAUCUGU ...........................((((((((..((((((((....))))))))...(((((........))))).......)))))))).(.((((((.......)))))).)... (-17.56 = -18.88 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:29 2006