| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,348,746 – 20,348,857 |
| Length | 111 |
| Max. P | 0.566789 |
| Location | 20,348,746 – 20,348,857 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.65 |
| Mean single sequence MFE | -32.51 |
| Consensus MFE | -20.04 |
| Energy contribution | -21.83 |
| Covariance contribution | 1.79 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.566789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20348746 111 - 23771897 UGCGCUGACAAAUUGGUGAAAUGCGGCUAACUUGCAUUGUUGGCUAUCAGUUAUGGGCAGUUAUCUUGUCUCGGCUUAUGGCCAAUUUUGGAUAGG---CGCCGAUUUGGUAAG------ ........((((((((((.(((((((.....)))))))(((((((((.((((..((((((.....)))))).)))).)))))))))..........---)))))))))).....------ ( -36.20) >DroEre_CAF1 18042 103 - 1 ---ACUGACAAAUGGGUGAAAUGCG-CUAUCUUGCAUUGU-GGCUAUCAGUUAUGGGCAC--AUCUGGA-UUUAUUUAUGGCCAAUUUUGGAUAGG---CGCCGAUUUGGUAGC------ ---.(((.(((((.(((..((((((-......))))))..-(.(((((.......(((.(--((..(..-....)..)))))).......))))).---)))).))))).))).------ ( -28.14) >DroAna_CAF1 18563 114 - 1 ---AUUGACAAAUUGGUGAAAUGCGGCUAUCUCGGAUUGU-GGCUAUCUUUUAUGGUCAC--AUCUUGAUUUGUUUUAUGGCCAAUUUUGGCCAAGACUUGCUGAUAUGGUAAGCCGGCG ---...(((((((..(.(((((.(((.....))).)))((-((((((.....))))))))--.)))..)))))))...((((((....)))))).(.((((((.....)))))).).... ( -33.20) >consensus ___ACUGACAAAUUGGUGAAAUGCGGCUAUCUUGCAUUGU_GGCUAUCAGUUAUGGGCAC__AUCUUGA_UUGAUUUAUGGCCAAUUUUGGAUAGG___CGCCGAUUUGGUAAG______ ........((((((((((.(((((((.....)))))))...((((((.(((...((((.........))))..))).))))))................))))))))))........... (-20.04 = -21.83 + 1.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:24 2006