| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,333,651 – 20,333,742 |
| Length | 91 |
| Max. P | 0.828665 |
| Location | 20,333,651 – 20,333,742 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 54.75 |
| Mean single sequence MFE | -15.53 |
| Consensus MFE | -8.78 |
| Energy contribution | -7.90 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.828665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20333651 91 - 23771897 ---------------AAUUAA-CAUGGUGUAUUAGCUUUGUAGCUAAAGAAUUAUUAUUUAUGUAAUAUCAUUGAAUUGCCAUUCAGUGAGCAAGCAUAUGCCUUAU ---------------......-...((((((((((((....))))))..............(((....(((((((((....)))))))))....))))))))).... ( -20.70) >DroSec_CAF1 2916 72 - 1 -------------------------------UUAGCUUUGUAGCUAAAGAAUUAUAAUUUAUGUAAUAACAUAGAAUUGCCACUCAGUGAG----UACAUGCCUUAU -------------------------------((((((....))))))..........(((((((....)))))))..((((((...))).)----)).......... ( -11.20) >DroEre_CAF1 2855 104 - 1 GUUUUAUAAAUAUAUAUAACACUAACAUGCAUUAGUUUUCGAACCAUAAUAAUGUGAUUCAUGU---AUUAUUAAAUAGCUACUUAGUAGGUGGCCACAUGCCUUAU ..((((..(((((((.....(((((......)))))....(((.((((....)))).)))))))---)))..))))..((((((.....))))))............ ( -14.70) >consensus _______________A____A__A___UG_AUUAGCUUUGUAGCUAAAGAAUUAUAAUUUAUGUAAUAUCAUUGAAUUGCCACUCAGUGAG____CACAUGCCUUAU ................................(((((....))))).......((((..(((((....(((((((........)))))))......)))))..)))) ( -8.78 = -7.90 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:21 2006