Locus 7566

Sequence ID 3L_DroMel_CAF1
Location 20,328,440 – 20,328,548
Length 108
Max. P 0.910202
window12290

overview

Window 0

Location 20,328,440 – 20,328,548
Length 108
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 78.97
Mean single sequence MFE -21.01
Consensus MFE -10.82
Energy contribution -10.62
Covariance contribution -0.20
Combinations/Pair 1.24
Mean z-score -2.28
Structure conservation index 0.52
SVM decision value 1.07
SVM RNA-class probability 0.910202
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20328440 108 - 23771897
ACAGAUAAUGCGAAAUUCUUAGCCUGAAAAAUCGUUUCAUGGUCUUCUUCCUAAAUCACUCCAGAAGUCAUAAAACUUUAUGCACCAUUUUGCAGUAUUUACAGAAAA
..(((((.((((((((.....((.((((.....((((.((((.(((((..............))))))))).)))))))).))...)))))))).)))))........ ( -17.64)
>DroSec_CAF1 24080 97 - 1
AUAGAUAAUGAGAAAUUCUUAGCCUGAACAAUCGUUCCAUGGACUUCUUCAUAA-----------AGUCAUAAAACUUUAUGCACCAUUUUGCAGUAUCUACAUAGAA
.((((((.((..((((....((((.((((....))))...)).))....(((((-----------(((......))))))))....))))..)).))))))....... ( -17.50)
>DroSim_CAF1 24260 97 - 1
AUAGAUAAUGCGAAAUUCUUAACCUGAACAAUCGUUCCAUGGUCUUCUUCAUAA-----------AGUCAUAAAACUUUAUGCACCAUUUUGCAGUAUCUACAUAGAA
.((((((.((((((((.....(((.((((....))))...)))......(((((-----------(((......))))))))....)))))))).))))))....... ( -23.90)
>DroEre_CAF1 24308 104 - 1
ACGGAUAUAGCGAAUUAACUGGCCUUAACAAUCAUUCCAUGGGGUUCUUCCUGAAGCACUGCAGAAGUCAUAAAACGUUAUGCACCAAUUUGUAGUAUCUG----AAA
.(((((((.(((((((.....((..((((..........((.(((.(((....))).))).))...((......)))))).))...))))))).)))))))----... ( -22.30)
>DroYak_CAF1 32741 104 - 1
ACAGAUAAUGCGAAAUUCUUAGCCUUAACAAUCAUUCCAUGUGGUUCUUUCUGAAUCACUGCAGAAGUCAUAAAACGUUAUGCACCAUUUUGCAGUAUCUA----AAA
..(((((.((((((((........................(((((((.....)))))))((((...((......))....))))..)))))))).))))).----... ( -23.70)
>consensus
ACAGAUAAUGCGAAAUUCUUAGCCUGAACAAUCGUUCCAUGGGCUUCUUCCUAAA_CACU_CAGAAGUCAUAAAACUUUAUGCACCAUUUUGCAGUAUCUACA_AAAA
.((((((.((((((((...............((((...))))........................(((((((....))))).)).)))))))).))))))....... (-10.82 = -10.62 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:20 2006