| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,326,246 – 20,326,359 |
| Length | 113 |
| Max. P | 0.500000 |
| Location | 20,326,246 – 20,326,359 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 82.03 |
| Mean single sequence MFE | -24.28 |
| Consensus MFE | -18.95 |
| Energy contribution | -19.57 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.78 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20326246 113 - 23771897 UAACUAUCUUUAAUU--UUUUUCUUUAUCAGUGGCGAGGAAUUGGUGUUUAGUUCCAAAACAAUGUCAAUUUACGACCUGAAAUUGAAAGAUGACCAGGUCAUUUUCACGGCCAA ...............--..............((((..(((((((.....)))))))..................((((((..(((....)))...)))))).........)))). ( -24.10) >DroGri_CAF1 28381 110 - 1 U--CUAUUCUG---GAUUCUCUUUGGAACAGUGGGGAGGAGUUGGUUUUUAACUCGAACAGCAUUUCCAUAUACGACCUCAAAAUAAAAGAUGAUCAUGUUCUAUUCACUGCCAA .--...(((..---((.....))..)))(((((((...((((((.....))))))(((((.(((((......................)))))....)))))..))))))).... ( -20.45) >DroSec_CAF1 21855 115 - 1 UAACUAUCUUAAAUAAUUUCUUCUUUAUCAGUGGCGAGGAAUUGGUGUUCAGUUCCAAAACAAUGUCAAUUUACGACCUGAAAUUGAAAGAUGACCAGGUCAUUUUCACUGCCAA ...............................(((((.(((((((.....)))))))..................((((((..(((....)))...))))))........))))). ( -26.50) >DroSim_CAF1 22042 115 - 1 UAACUAUCUCAAAUUAUUCCUUUUUUAUCAGUGGCGAGGAAUUGGUGUUCAGUUCCAAAACAAUGUCAAUUUACGACCUGAAAUUGAAAGAUGACCAGGUCAUUUUCACUGCCAA ...............................(((((.(((((((.....)))))))..................((((((..(((....)))...))))))........))))). ( -26.50) >DroEre_CAF1 22052 115 - 1 UAACAAUCUGAAAUAAUUUCUUCUUCAACAGUGGCGAGGAAUUGGUUUUCAGUUCCAACACGAGGUCCAUUUACGACCUGAAAAUGAAAGAUGACCAGGUAAUUUUUACGGCCAA .....(((((......((((...(((....(((....(((((((.....)))))))..))).(((((.......))))))))...))))......)))))............... ( -24.10) >DroYak_CAF1 30606 112 - 1 UAACAAUCUCAAAAAAUUUC---UUUAACAGUGGCGAGGAAUUGGUUUUCAGUUCCAACACAAGGUCCAUUUACGACCUGAAAUUGAAAGAUGACCAGGUAAUUUUUACGGCCAA ....................---.......(((....(((((((.....)))))))..)))..((((........(((((..(((....)))...))))).........)))).. ( -24.03) >consensus UAACUAUCUUAAAUAAUUUCUUCUUUAACAGUGGCGAGGAAUUGGUGUUCAGUUCCAAAACAAUGUCAAUUUACGACCUGAAAUUGAAAGAUGACCAGGUCAUUUUCACGGCCAA ...............................((((..(((((((.....)))))))..................((((((..(((....)))...)))))).........)))). (-18.95 = -19.57 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:17 2006