Locus 7562

Sequence ID 3L_DroMel_CAF1
Location 20,322,313 – 20,322,405
Length 92
Max. P 0.856367
window12284

overview

Window 4

Location 20,322,313 – 20,322,405
Length 92
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 77.12
Mean single sequence MFE -26.18
Consensus MFE -12.08
Energy contribution -12.76
Covariance contribution 0.68
Combinations/Pair 1.24
Mean z-score -2.09
Structure conservation index 0.46
SVM decision value 0.81
SVM RNA-class probability 0.856367
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20322313 92 - 23771897
CAUCUAUUAAAGUAAUAGCAGCAAUAAGCGAAGGGUCUUUUUUGGUGGCCCACUUGUGGCACAAACAUAUUAUU---------G---UAUAUU--------UUGUGUGGUUG
...((((((...))))))((((.....((((.(((((.........)))))..)))).(((((((.((((....---------.---.)))))--------)))))).)))) ( -19.70)
>DroSec_CAF1 17820 93 - 1
CAUCUAUUAAAGUAAUAGCAGCAAUAAGCGAGGCGUCUUUUUUGGUGGCCCACUUGUGGCGCAAACAUAUUGUU---------G---UGUAUU-------AUUGUGUGGAUG
(((((((...((((((((((((((((.(....(((((.....(((....))).....)))))...).)))))))---------)---).))))-------)))..))))))) ( -30.10)
>DroSim_CAF1 18040 93 - 1
CAUCUAUUAAAGCAAUAGCAGCAAUAAGCGAGGGGUCUUUUUUGGUGGCCCACUUGUGGCACAAACAUAUUAUU---------U---UGUGUU-------AUUGUGUGGAUG
(((((((....((((((((.((.....((((((((((.........))))).))))).))(((((........)---------)---))))))-------)))))))))))) ( -30.60)
>DroEre_CAF1 17959 95 - 1
CAUCUACUAAAGUAAUAACAGCAAUAACCGAAGGGUCUCUUUUGGAGGCCCACUUGUGGCACAAACAUAU-----------------UAUACUUUGCAGCCUUUAAAAGAGG
..........................(((....)))((((((((((((((((....)))..((((.....-----------------.....))))..))))))))))))). ( -23.10)
>DroYak_CAF1 26448 112 - 1
CAUCUAUUAAAGUAAUAACAGCAAUAGCCGAAGGGUCUUUUUUGGAGGCCCACUUGUGGCACAAACAUGUUAUGAGCGAGACUGUCUUAUAUUUUGCAGCCUAUAAAAGAUG
(((((.(((.((..((((((......((((..(((((((.....))))))).....)))).......))))))..((((((..........))))))...)).))).))))) ( -27.42)
>consensus
CAUCUAUUAAAGUAAUAGCAGCAAUAAGCGAAGGGUCUUUUUUGGUGGCCCACUUGUGGCACAAACAUAUUAUU_________G___UAUAUU_______AUUGUGUGGAUG
(((((((....((....)).((.(((((....(((((.........))))).))))).)).............................................))))))) (-12.08 = -12.76 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:15 2006