| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,321,940 – 20,322,050 |
| Length | 110 |
| Max. P | 0.882048 |
| Location | 20,321,940 – 20,322,050 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 80.24 |
| Mean single sequence MFE | -33.68 |
| Consensus MFE | -20.19 |
| Energy contribution | -21.72 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.882048 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20321940 110 - 23771897 CAUGGUGUCAAGAUCAAAUUGACGCCAA--ACUGUGUCACACUGCUGCCUGCUAACGGUUGCUUUAUCGAGGCGAGGGUACUUCACAGAGUAUACUUAUCGGAUACAGUGGA ..(((((((((.......))))))))).--((((((((.....((.(((.......))).)).....(((...(((..(((((....)))))..))).)))))))))))... ( -37.10) >DroSec_CAF1 17455 110 - 1 CAUGGUGUCAAGAUCAAAUUGGCGCCAA--ACUGUGUCACACUGCCGCCUGCUAGAGGUUGCUCUAUCGAGGCGAGGGUACUUCACAGAGUAUACUUAUCGGAUACAGUAGA ..(((((((((.......))))))))).--((((((((...((..((((((.(((((....))))).).))))).))((((((....))))))........))))))))... ( -41.20) >DroSim_CAF1 17684 110 - 1 CAUGGUGUCAAGAUCAAAUUGGCGCCAA--ACUGUGUCACACUGCCGCCUGCUAGAGGUUGCUUUAUCGAGGCGAGGGUACUUCACAGAGUAUACUUAUCGGAUACAGUAGA ..(((((((((.......))))))))).--((((((((...((..((((((.(((((....))))).).))))).))((((((....))))))........))))))))... ( -38.60) >DroEre_CAF1 17622 92 - 1 CAUGGUGUCAAGAUCAAAUUGGCGCCAA--ACUGUGUCACAC-----------AGAGGUUGC-UUAG-----CGAAGGUACUUCACAAAGU-UACUAAUCGGAUACAGUGGA ..(((((((((.......))))))))).--((((((((....-----------.(((((.((-((.(-----.((((...)))).).))))-.)))..)).))))))))... ( -29.90) >DroYak_CAF1 26095 105 - 1 CAUGGUGUCAAGAUCAAAUUGGCGCCAA--ACUGUGUCACACUGCCGGUGGCUAAAGGUUGCCUUAU-----CGAGGGUACUUCACAAAGUAUGCUUAUCGGAUACAGUGGA ..(((((((((.......))))))))).--((((((((........((..((.....))..))....-----.(((.((((((....)))))).)))....))))))))... ( -37.90) >DroAna_CAF1 17420 97 - 1 CAUGGUGUCAAGAUCGAAUCGGCGCCAAAAACUAUGUCAAAAU----------ACAGGUUGUUGAAU-----GGAUUGUACUUCACACUAUCUAUUUAUCAUAAACAGUGGG ..(((((((...........)))))))..((((.(((......----------)))))))..(((((-----((((.((.......)).)))))))))((((.....)))). ( -17.40) >consensus CAUGGUGUCAAGAUCAAAUUGGCGCCAA__ACUGUGUCACACUGCCGCCUGCUAGAGGUUGCUUUAU_____CGAGGGUACUUCACAGAGUAUACUUAUCGGAUACAGUGGA ..(((((((((.......)))))))))...((((((((.....((.....))....................(((..((((((....)))))).....)))))))))))... (-20.19 = -21.72 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:14 2006