| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,251,426 – 2,251,516 |
| Length | 90 |
| Max. P | 0.895113 |
| Location | 2,251,426 – 2,251,516 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 89.07 |
| Mean single sequence MFE | -30.90 |
| Consensus MFE | -26.02 |
| Energy contribution | -24.90 |
| Covariance contribution | -1.12 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.895113 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2251426 90 + 23771897 GCCUCCUAACUUUUCUGUUGUUUCAAACGGGAAAAGGGUUGGGGAACGGCAGUUAUCUGGAGCUCAGAUUGGAUGCAGCUGCUGAAUCCU ...((((((((((((((((......))))))))...))))))))..(((((((((((..(........)..))))..)))))))...... ( -29.20) >DroSec_CAF1 1275 90 + 1 GCCUCCUAGUUUUCCUGUUGUUUCAAAUGGGAAAAGGGUUGGGGAACGGCAGUUAUCUGGAGCCAAGAUUGGAUGCAGCUGCUGAAUCCU .((.(((..((((((((((......)))))))))))))..))(((.(((((((((((..(........)..))))..)))))))..))). ( -29.40) >DroSim_CAF1 1289 90 + 1 GCCUCCUAGUUUUCCUGUUGUUUCAAACGGGAAAAGGGCUGGGGAACGGCAGUUAUCUGGAGCCAAGAUUGGAUGCAGCUGCUGAAUCUU ...((((((((((((((((......)))))))))...)))))))..(((((((((((..(........)..))))..)))))))...... ( -32.40) >DroEre_CAF1 2156 90 + 1 GGCUCCUAAUUUUCCUGUGGUUUCACAUGGGAAACGGGUUGGAGAACGGCGGGUAUCGGGAGCUUAGGUUGGAUGCAGCAGCUGAAUCCU ((((((..((...(((((.((((..(((.(....).)..))..)))).))))).))..))))))......((((.(((...))).)))). ( -32.60) >consensus GCCUCCUAAUUUUCCUGUUGUUUCAAACGGGAAAAGGGUUGGGGAACGGCAGUUAUCUGGAGCCAAGAUUGGAUGCAGCUGCUGAAUCCU ..((((.((((((((((((......)))))))))...)))))))..(((((((((((..(........)..))))..)))))))...... (-26.02 = -24.90 + -1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:28 2006