| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,301,935 – 20,302,033 |
| Length | 98 |
| Max. P | 0.885887 |
| Location | 20,301,935 – 20,302,033 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.06 |
| Mean single sequence MFE | -38.13 |
| Consensus MFE | -28.03 |
| Energy contribution | -26.70 |
| Covariance contribution | -1.33 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.885887 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20301935 98 - 23771897 GGGAAUCCUGUUGCUGUUCAUGCUGAUAGCACUCCGGUGGGAGUAGCAGCAUAGCAAAGGGCAUUCUUAUGUCCA---CGGAAC---------UA---------CCGGGAAUACCGAAG ((...((((((((((....((((((.....(((((....)))))..))))))))))).((((((....)))))).---......---------..---------.)))))...)).... ( -34.40) >DroSec_CAF1 11465 98 - 1 GGGAAUCCUGUUGCUGCUCAUGCUGAUAGCACUCCGGUGGGAGUAGCAGCAUAGCGAAGGGCAUUCUUAUGUCUA---CGGAAC---------UA---------CCGGGACCACCGAAG ((...((((((((((((((..((((.........))))..))))))))))).......((((((....)))))).---(((...---------..---------))))))...)).... ( -34.10) >DroSim_CAF1 11183 98 - 1 GGGAAUCCUGUUGCUGCUCAUGCUGAUAGCACUCCGGUGGGAGUAGCAGCAUAGCAAAGGGCAUUCUUAUGUCCA---CGGAAC---------UG---------CCGGGACCACCGAAG (((((((((.(((((....((((((.....(((((....)))))..))))))))))).))).))))....((((.---(((...---------..---------)))))))..)).... ( -37.10) >DroEre_CAF1 11184 107 - 1 GCGAAUCCUGUUGCUGCUCAUGCUGAUAGCACUCCGGUGGGAGUAGCAGCAUAGCGAAGGGCAUUCUUAUGUCCA---CGGAAC---------UGCCGGGACUACCGGAACUACCGAAG ((......(((((((((((..((((.........))))..)))))))))))..))...((((((....)))))).---(((...---------..((((.....)))).....)))... ( -41.10) >DroYak_CAF1 10795 98 - 1 AGGAAUCCUGUUGCUGCUCAUGCUGAUAGCACUCCGGUGGGAGUAGCAGCAUAGCAAAGGGCAUUUUUAUGUCCG---CGGAAC---------UU---------CCGGAACUGCCGAAA .((((((((((((((((((..((((.........))))..)))))))))))..((...((((((....)))))))---))))..---------))---------))((.....)).... ( -36.90) >DroPer_CAF1 10541 107 - 1 GCGAGUCCUGGUGCUGGUCGUGCUGGUAGCAUUCCGGCGGCAGCAACAGCAUACCAAAAGGCAUAUGCUCGGCCGCAUCGGAAGUCUUUACAGUG---------CCGGGCU--CUG-AG ..(((.(((((..(((....(((.....)))((((((((((......((((((((....))..))))))..)))))..))))).......)))..---------)))))))--)..-.. ( -45.20) >consensus GGGAAUCCUGUUGCUGCUCAUGCUGAUAGCACUCCGGUGGGAGUAGCAGCAUAGCAAAGGGCAUUCUUAUGUCCA___CGGAAC_________UG_________CCGGGACUACCGAAG (((((((((.....((((.((((((.....(((((....)))))..))))))))))..))).))))))...(((.....))).......................(((.....)))... (-28.03 = -26.70 + -1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:12 2006