Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,295,871 – 20,295,962 |
Length | 91 |
Max. P | 0.633988 |
Location | 20,295,871 – 20,295,962 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 75.76 |
Mean single sequence MFE | -24.90 |
Consensus MFE | -13.25 |
Energy contribution | -14.42 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.28 |
Mean z-score | -1.69 |
Structure conservation index | 0.53 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633988 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20295871 91 - 23771897 -------GGAGGAUCGAAAGCUGUUUUGGAAACGUCUGAAGAGAUCCCUGGAGGUCAUAGGGAUCAA---CUCCAGAGAGAUCAGUGUUUAGAAAACA----UGU -------............((((((((..(((((.((((...((((((((.......))))))))..---(((....))).)))))))))..))))))----.)) ( -27.20) >DroPse_CAF1 5020 97 - 1 CAAAGCUGGAGGAGCGUAAACUAUUUUGGAAACGCUUAAGAAGAUCGCUGGAAGUCAUUGGCAUCAGUAGUUCGAAAGAGAG--AGCUUGAGGAAACA----C-- ..(((((....((((((...(......)...)))))).....(((.((..(......)..))))).....(((....)))..--)))))..(....).----.-- ( -21.40) >DroSim_CAF1 5147 91 - 1 -------GGAGGAGCGGAAGCUGUUCUGGAAACGUUUGAGGAGAUCCCUGGAGGUCAUAGGGAUCAA---CUCCAGAGAGAUCAGUGUUUAGAAAACA----CGU -------((((.(((....))).))))(....)....(((..((((((((.......))))))))..---)))...........(((((.....))))----).. ( -32.50) >DroEre_CAF1 5440 91 - 1 -------GGAGGAGCGGAAGCUGUUCUGGAAACGUUUGAGGAGAUCUCUUGACCUCAUAGGGAUCAG---UUCCAGAGAGAUCAAUGUUUAGAAAUCA----UGU -------((((.(((....))).))))(....).((((((.(((((((((..........(((....---.))).))))))))..).)))))).....----... ( -25.60) >DroYak_CAF1 5071 95 - 1 -------GGAGGAUCGGAAGCUGUUUUGGAAACGUUUGAGGAGGUCCCUGGACGUCAUAGGGAUCAG---UUCCAGAGAGAUGAAUGUUUAGAAAACAAUUUUUU -------........(((((.((((((..((((((((.....((((((((.......))))))))..---(((....)))..))))))))..)))))).))))). ( -23.00) >DroPer_CAF1 5020 99 - 1 CAAAGCUGGAGGAGCGUAAACUAUUUUGGAAACGCUUAAGAAGAUCGCUGGAAGUCAUUGGCAUCAGUAGUUCGAAAGAGAG--AGCUUGAGAAAACA----CUU ..(((((....((((((...(......)...)))))).....(((.((..(......)..))))).....(((....)))..--))))).........----... ( -19.70) >consensus _______GGAGGAGCGGAAGCUGUUUUGGAAACGUUUGAGGAGAUCCCUGGAAGUCAUAGGGAUCAG___UUCCAGAGAGAUCAAUGUUUAGAAAACA____CGU .......((((.(((....))).))))(....).((((((..((((((((.......)))))))).....(((....))).......))))))............ (-13.25 = -14.42 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:11 2006