| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,290,734 – 20,290,828 |
| Length | 94 |
| Max. P | 0.629135 |
| Location | 20,290,734 – 20,290,828 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 78.95 |
| Mean single sequence MFE | -31.68 |
| Consensus MFE | -23.14 |
| Energy contribution | -22.37 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629135 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20290734 94 + 23771897 ---------------------ACGAUGGGUCGCGCCGAGGUAGGUACGCCCAAGUACCUCGCCAACAAGAUGAAAUCGAAGGGUCUGCAGAAGCUGCGCUGGUACUGCCAGAUGU ---------------------....((((.((..((......))..))))))((((((..((............(((....)))..((((...)))))).))))))......... ( -28.00) >DroGri_CAF1 32 108 + 1 ------AUAUAUAAU-UGGUAAAAAUGGGACGCGCUGAGGUUGGUACGCCUAAGUACCUGGCCAACAAGAUGAAGGCGAAGGGCCUGCAGAAGUUGCGCUGGUACUGCCAGAUGU ------........(-((((.....((((.((..((......))..))))))((((((.(((((((....((.((((.....)))).))...)))).)))))))))))))).... ( -36.10) >DroSec_CAF1 1 104 + 1 -----------AAAAGAAGCUACGAUGGGUCGCGCCGAAGUGGGUACGCCCAAGUACCUGGCCAACAAGAUGAAGUCGAAGGGCCUGCAGAAGCUGCGCUGGUACUGCCAGAUGU -----------.......((.....((((.((..((......))..))))))((((((.((((.....(((...)))....)))).((((...))))...))))))))....... ( -33.60) >DroWil_CAF1 1 104 + 1 -----------UAAAUAAUAAAAAAUGGGAAAAGCUGAGGUGGGUACUCCCAAGUACCUUGCCAACAAAAUGAAGGCAAAGGGCUUGCAGAAGUUGCGCUGGUAUUGUCAGAUGU -----------.......................((((..((((....))))((((((..((((((....((.((((.....)))).))...)))).)).)))))).)))).... ( -25.70) >DroYak_CAF1 1 99 + 1 ----------------ACGUUAAGAUGGGUCGCGCCGAGGUGGGUACGCCCAAGUACCUGGCCAACAAGAUGAAGUCGAAGGGCCUGCAGAAGCUGCGCUGGUACUGCCAGAUGU ----------------(((((....((((.((..((......))..))))))((((((.((((.....(((...)))....)))).((((...))))...))))))....))))) ( -34.30) >DroMoj_CAF1 287 114 + 1 AAAAUUACAAAUAAA-GUGGAAACAUGGGUCGCGCUGAAGUUGGUACGCCCAAGUACUUGGCCAACAAGAUGAAGGCCAAGGGAUUGCAGAAGCUGCGCUGGUAUUGUCAGAUGU .....(((.......-(((....)))(((.((..((......))..)))))..)))(((((((..(.....)..))))))).....((((...)))).((((.....)))).... ( -32.40) >consensus ___________UAAA_AAGUAAAGAUGGGUCGCGCCGAGGUGGGUACGCCCAAGUACCUGGCCAACAAGAUGAAGGCGAAGGGCCUGCAGAAGCUGCGCUGGUACUGCCAGAUGU .........................((((.((.(((......))).))))))((((((.((((..................)))).((((...))))...))))))......... (-23.14 = -22.37 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:08 2006