Locus 7555

Sequence ID 3L_DroMel_CAF1
Location 20,288,098 – 20,288,218
Length 120
Max. P 0.596124
window12277

overview

Window 7

Location 20,288,098 – 20,288,218
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 88.67
Mean single sequence MFE -40.70
Consensus MFE -31.69
Energy contribution -32.00
Covariance contribution 0.31
Combinations/Pair 1.29
Mean z-score -2.47
Structure conservation index 0.78
SVM decision value 0.13
SVM RNA-class probability 0.596124
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20288098 120 - 23771897
ACUAUCUUCUGCUUGUCCCAUUUCUGGGGAUCCACGCAGAAGGUAUCCUCCUUCCGGAGAAGGUGGAAUACGUUCUCCAGGAUCUUCCAGUCGUCCAUGAGGCCAUCGCGAAUCUGGUCA
..((((((((((.((((((.......))))..)).)))))))))).......(((((((((.(((...))).)))))).)))....((((((((..(((....))).))))..))))... ( -40.60)
>DroSec_CAF1 33 120 - 1
ACUAUCUUCUGCUUGCCCCAUUUCUGGGGAUCCACGCAGAAGGUAUCCUCCUUCUGGAGCAGGUGGAAUACGUUCUCCAGGAUUUUCCAGUCGUCCAUGAGGCCAUCGCGAAUCUGGUCA
..((((((((((.(((((((....)))))...)).))))))))))......((((((((.(.(((...))).).))))))))....((((((((..(((....))).))))..))))... ( -41.10)
>DroSim_CAF1 37 120 - 1
ACUAUCUUCUGCUUGCCCCAUUUUUGGGGAUCCACGCAGAAGGUAUCCUCCUUCUGGAGGAGGCGGAAUACGUUCUCCAGGAUUUUCCAGUCGUCCAUGAGGCCAUCGCGAAUCUGGUCA
..((((((((((.(((((((....)))))...)).))))))))))((((((....))))))(((((((...((((....)))).)))).)))........(((((.........))))). ( -46.40)
>DroEre_CAF1 39 120 - 1
ACUAUCUUCUGCUUUCCCCAUUUCUGGGGAUCUACGCAGAAGGUGUCCGCUUUCUGGAGAAGGUGGAAAACGUUCUCAAGGAUAUUCCAGUCGUCCAUGAGGCCAUCGCGAAUCUGGUCA
..((((((((((..((((((....)))))).....))))))))))(((((((((....)))))))))....(..((((.((((.........)))).))))..)................ ( -44.70)
>DroYak_CAF1 37 120 - 1
ACUAUCUUCUGCUUACCCCAUUUCUGGGGAUCCACGCAGAAGGUGUCCUCCUCCUGGAGCAGGUGGAAUACGUUCUCCAGGAUAUUCCAGUCCUCCAUGAGGCCAUCGCGAAUCUGCUCC
..((((((((((...(((((....)))))......))))))))))..........((((((((((((((..((((....))))))))).(.((((...)))).).......))))))))) ( -43.60)
>DroAna_CAF1 35 120 - 1
ACUAUUUUUUGCUGGCCCCAUUUCUCAGGAUCCAUGCAGAAGGUAUCCUCCCGUUGGAGCAAUCUAAACACGUUCUCCAGGACAUUCCAGUCGUCCAUGAGACCAUCGCGAAUUUCAUUA
..(((((((((((((..((........))..))).))))))))))...((.(((((((....)))))....(.((((..((((.........))))..)))).)..)).))......... ( -27.80)
>consensus
ACUAUCUUCUGCUUGCCCCAUUUCUGGGGAUCCACGCAGAAGGUAUCCUCCUUCUGGAGCAGGUGGAAUACGUUCUCCAGGAUAUUCCAGUCGUCCAUGAGGCCAUCGCGAAUCUGGUCA
..((((((((((...(((((....)))))......))))))))))(((.(((((....))))).)))...(((((((..((((.........))))..)))).....))).......... (-31.69 = -32.00 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:07 2006