Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,287,319 – 20,287,432 |
Length | 113 |
Max. P | 0.562802 |
Location | 20,287,319 – 20,287,432 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 84.49 |
Mean single sequence MFE | -29.47 |
Consensus MFE | -17.64 |
Energy contribution | -17.56 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.15 |
Mean z-score | -2.08 |
Structure conservation index | 0.60 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562802 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20287319 113 - 23771897 AACGAGUUUCAGCUCACCAGAUGUAUCUGAGCGAUUCUUAGAUGCAAAU--CAAGGGCGAAACAAGUACUACGAGUGCUUUUUGCUGUCGUC---CACGUGCAUUGCCAACUAAUGAA ...((((....))))....(((((((.((..((((.(((.(((....))--))))(((((((..(((((.....))))))))))))))))..---)).)))))))............. ( -30.40) >DroSec_CAF1 7361 107 - 1 AACAAGUUUCAGCUCACCAGAUGUAUCUGAGCGAUUCGUAGAUGCAAAU--CAAG------ACAAGUACUACUAGUGCUUGUUGUUGUCGUC---CACGUGCAUCGCAAACUAAUGAA ....(((((........((((....)))).(((((.(((.(((((((..--...(------((((((((.....))))))))).))).))))---.)))...))))))))))...... ( -31.60) >DroSim_CAF1 7304 107 - 1 AACAAGUUUCAGCUCACCAGAUGUAUCUGAGCGAUUCUUAGAUGCAAAU--CAAG------ACAAGUACUACUAGUGCUUGUUGUUGUCGUC---CACGUGCAUCGCAAACUAAUGAA .......((((........(((((((.((..((((.....(((....))--)..(------((((((((.....)))))))))...))))..---)).))))))).........)))) ( -29.43) >DroEre_CAF1 10736 112 - 1 AACAAGUUUCACCUCACCAGAUGUAUCUAUCCGAUUCCUAGAUGCAAAUCUCAAGCGCAAAACAAGUGC---UAGUGCUUGUAGUUGUUGUC---CACGUGCAUCGGCAACUAAUCAA .((((((..(...........((((((((.........)))))))).......(((((.......))))---).).))))))((((((((..---.........))))))))...... ( -25.10) >DroYak_CAF1 19279 113 - 1 AACUAGUUUCAGCUCACCAGAUGUAUCUAUCCGAUUCUUAGAUGCAAAU--GAAGCGCAAUACAAGUGC---UAGUGCUUGUACUUGUUGUCGGUCACGUGCAUCGACAACUAAUCAA .....((((((..((....))((((((((.........))))))))..)--)))))....((((((((.---...))))))))...((((((((((....).)))))))))....... ( -30.80) >consensus AACAAGUUUCAGCUCACCAGAUGUAUCUGAGCGAUUCUUAGAUGCAAAU__CAAG_GC_A_ACAAGUACUACUAGUGCUUGUUGUUGUCGUC___CACGUGCAUCGCCAACUAAUGAA ....((((...((....((((....))))...........((((((...............((((((((.....))))))))......(((.....))))))))))).))))...... (-17.64 = -17.56 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:06 2006