Locus 7553

Sequence ID 3L_DroMel_CAF1
Location 20,283,591 – 20,283,699
Length 108
Max. P 0.783918
window12275

overview

Window 5

Location 20,283,591 – 20,283,699
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 80.00
Mean single sequence MFE -24.21
Consensus MFE -15.26
Energy contribution -17.82
Covariance contribution 2.56
Combinations/Pair 1.24
Mean z-score -1.92
Structure conservation index 0.63
SVM decision value 0.57
SVM RNA-class probability 0.783918
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20283591 108 + 23771897
AGGAGCAUAUCUGCUAUGUAUAUACAUAUAUAUGUAUAUUGUUGUCAAUAUGCUCCACAAUUGGAGCUAACAUUACACCUCUUCCAAUUGGAGUUGGCCACUGUUGCC
.(((((((((..((.....((((((((....))))))))....))..))))))))).((((.(..((((((...........(((....)))))))))..).)))).. ( -33.00)
>DroSec_CAF1 3651 108 + 1
AGGAGCAUAUCUACUAUUUAUAUACAUAUAUAUUUAUAUUGAUGUCAAUAUGCGCCACAAUUGAAGCUAACAUAACACCUCCUUUAAUUGGAGUUGGCGACUGUUGCC
.((.((((((..((.(((.(((((.((....)).))))).)))))..)))))).)).((((.(..((((((........(((.......)))))))))..).)))).. ( -23.20)
>DroSim_CAF1 3649 108 + 1
AGGAGCAUAUUUACUAUGUAUAUACAUAUAUAUUUAUAUUGUUGUCAAUAUGCGCCACAAUUGAAGCUAACAUAACACCUCUUCUAGUUGGAGUUGGCGACUGUUGCC
.((.(((((((.((.(((((.(((......))).)))))....)).))))))).)).((((.(..((((((.((((..........))))..))))))..).)))).. ( -24.80)
>DroEre_CAF1 6964 94 + 1
AGGAGCAUAUCUACUCUAUAUGGACAUAUAUGUAUAUC---UUGUGAAUAUCU-----------UGCCAACACAACGCAUCUUCCAAUUGGAGUUGGCGACUGUUGCC
((((.((((.......((((((....))))))......---.))))....)))-----------)..(((((...(((...((((....))))...)))..))))).. ( -16.94)
>DroYak_CAF1 15556 100 + 1
AGGAGCAUAUCCACUAUUUAU--------AUAUAUAUCUUUUUGUCAAUAUGCGCCACAAUUGGAGCCAACAUAACAAAUCUUCCAAUUGGAGUUGGCGACUGUUGCC
.((.((((((..((.......--------..............))..)))))).)).((((.(..((((((...........(((....)))))))))..).)))).. ( -23.10)
>consensus
AGGAGCAUAUCUACUAUGUAUAUACAUAUAUAUAUAUAUUGUUGUCAAUAUGCGCCACAAUUGAAGCUAACAUAACACCUCUUCCAAUUGGAGUUGGCGACUGUUGCC
.((.((((((..((.(((((((((......)))))))))....))..)))))).)).((((.(..((((((...........(((....)))))))))..).)))).. (-15.26 = -17.82 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:05 2006