Locus 7550

Sequence ID 3L_DroMel_CAF1
Location 20,255,491 – 20,255,611
Length 120
Max. P 0.696721
window12271

overview

Window 1

Location 20,255,491 – 20,255,611
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 89.44
Mean single sequence MFE -31.57
Consensus MFE -27.49
Energy contribution -28.60
Covariance contribution 1.11
Combinations/Pair 1.04
Mean z-score -1.89
Structure conservation index 0.87
SVM decision value 0.34
SVM RNA-class probability 0.696721
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20255491 120 - 23771897
GCUUGCAGACCCUUUACAUUAUUGACGUAGGCAUACUUCCCCGUUUGCACCAUCAUCUCCACCUUACCUGCCGGCGAGCCGCCGUCGUUGUAAAACUGUUCCACUUUCGUCUGGGACUUA
............((((((....(((((..(((.....((.(((...(((...................)))))).)))))..))))).))))))...((((((........))))))... ( -24.01)
>DroSec_CAF1 8315 120 - 1
GCAUCCAGACGCCUUAUACUUCUGAUGUAGGCAAACUUCCCCGUUUGCACCAUCAUAUCCACCUUACCUGCCGGCUUGCCGCUGGAGUCGUAAAACUGCUCCACUUUCGUCUGGGACUUA
...((((((((...........(((((...((((((......))))))..)))))..............((.((....))))((((((.(.....).))))))....))))))))..... ( -35.30)
>DroSim_CAF1 8232 120 - 1
GCAUCCAGACGCUUUAUACUUCUGAUGUAGGCAAACUUCCCCGUUUGCACCAUCAUAUUCACCUUACCUGCCGGCUUGCCGCUGGAGUCGUAAAACUGCUCCACUUUCGUCUGGGACUUA
...(((((((((..........(((((...((((((......))))))..))))).................((....))))((((((.(.....).)))))).....)))))))..... ( -35.40)
>consensus
GCAUCCAGACGCUUUAUACUUCUGAUGUAGGCAAACUUCCCCGUUUGCACCAUCAUAUCCACCUUACCUGCCGGCUUGCCGCUGGAGUCGUAAAACUGCUCCACUUUCGUCUGGGACUUA
...(((((((............(((((...((((((......))))))..)))))........((((...(((((.....)))))....))))...............)))))))..... (-27.49 = -28.60 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:01 2006