Locus 7548

Sequence ID 3L_DroMel_CAF1
Location 20,254,055 – 20,254,165
Length 110
Max. P 0.537164
window12269

overview

Window 9

Location 20,254,055 – 20,254,165
Length 110
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 85.14
Mean single sequence MFE -28.73
Consensus MFE -20.80
Energy contribution -23.80
Covariance contribution 3.00
Combinations/Pair 1.00
Mean z-score -1.83
Structure conservation index 0.72
SVM decision value 0.01
SVM RNA-class probability 0.537164
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20254055 110 - 23771897
CAACUAAUUUGCAGCUGCUAAUUUUACAGU----------GUUCAUUACAGCAGUUUUUCAGCUGUACUACGCGUUUUAUUCGAUAUUUUCAAAGAUUUUCAAAGCCGCAAGAGGGCGCU
...((..(((((.(((...((((((...((----------((....((((((.........))))))..)))).........((.....)).)))))).....))).)))))..)).... ( -21.60)
>DroSec_CAF1 6360 110 - 1
CAACUAAUUAGCAGCUGCUAAUUUAACAGUGCCCUGUCGUGUUGAUUACAGCAGUUUUCCAGCUGUACUACGCGU----------AUUUUCAAUGAUUUUCAAAUCCGCAAGAGGGCGCU
.....(((((((....)))))))....((((((((..(((((....((((((.........))))))..))))).----------.....................(....))))))))) ( -32.30)
>DroSim_CAF1 6317 110 - 1
CAACUAAUUAGCAGCUGCUAAUUUAACAGUGCCCUGUCGUGUUGAUUACAGCAGUUUUCCAGCUGUACUACGCGU----------AUUUUCAAUGAUUUUCAAAGCCGCAAGAGGGCGCU
.....(((((((....)))))))....((((((((..(((((....((((((.........))))))..))))).----------.....................(....))))))))) ( -32.30)
>consensus
CAACUAAUUAGCAGCUGCUAAUUUAACAGUGCCCUGUCGUGUUGAUUACAGCAGUUUUCCAGCUGUACUACGCGU__________AUUUUCAAUGAUUUUCAAAGCCGCAAGAGGGCGCU
.....(((((((....)))))))....((((((((..(((((....((((((.........))))))..)))))................................(....))))))))) (-20.80 = -23.80 +   3.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:59 2006