Locus 7545

Sequence ID 3L_DroMel_CAF1
Location 20,252,410 – 20,252,530
Length 120
Max. P 0.512444
window12261

overview

Window 1

Location 20,252,410 – 20,252,530
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 95.97
Mean single sequence MFE -41.35
Consensus MFE -39.00
Energy contribution -38.62
Covariance contribution -0.38
Combinations/Pair 1.08
Mean z-score -1.41
Structure conservation index 0.94
SVM decision value -0.04
SVM RNA-class probability 0.512444
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20252410 120 + 23771897
UCCUGGUCAGCAUUUCGCAGGGGGUCCAGGACUUCGCCCUCGAUCUCCUGCAGCGCAUAUCCGUUGAAGUGGAGAAGGCCAACAAGGAUUUCAUGAUAUCGCCCUUUUCCGUCUGGUCAC
...((..(((((((((((((((((((.(((.......))).))))))))))((((......)))))))))((((((((((.....))(((....))).....))))))))).)))..)). ( -43.80)
>DroSec_CAF1 4704 120 + 1
UCCUGGUCAGCAUUUCGCAGGGGGUCCAGGACUUCGCCCUCGAUCUUCUGCAGCGCAUAUCCGUCGAAGUGGAGAAGACCAACAAGGAUUUCAUGAUAUCGCCCUUCUCCGUCUGGUCAC
...((..(((((((((((((((((((.(((.......))).)))))))))).(((......))).)))))(((((((.((.....))(((....)))......)))))))).)))..)). ( -40.40)
>DroSim_CAF1 4680 120 + 1
UCCUGGUCAGCAUUUCGCAGGGGGUCCAGGACUUCGCCCUCGAUCUUCUGCAGCGCAUAUCCGUCGAAGUGGAGAAGACCAACAAGGAUUUCAUGAUAUCGCCCUUCUCCGUCUGGUCAC
...((..(((((((((((((((((((.(((.......))).)))))))))).(((......))).)))))(((((((.((.....))(((....)))......)))))))).)))..)). ( -40.40)
>DroYak_CAF1 5229 120 + 1
UCCUGCUCAGCAUUUCGCAGGGGGUCCAGGACUUCGCCCUCGAUCUCCUACAGCGCAUUUCCGUCGAGGUGGAGAAGGCCAACAGGGAUUUCAUGAUAUCGCCCUUCUCCGUCUGGUCAC
...(((.(.((.....))((((((((.(((.......))).))))))))...).))).....(.(.((..((((((((((....))(((........)))..))))))))..)).).).. ( -40.80)
>consensus
UCCUGGUCAGCAUUUCGCAGGGGGUCCAGGACUUCGCCCUCGAUCUCCUGCAGCGCAUAUCCGUCGAAGUGGAGAAGACCAACAAGGAUUUCAUGAUAUCGCCCUUCUCCGUCUGGUCAC
...((..(((((((((((((((((((.(((.......))).)))))))))).(((......))).)))))(((((((.((.....))(((....)))......)))))))).)))..)). (-39.00 = -38.62 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:51 2006