| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,251,362 – 20,251,499 |
| Length | 137 |
| Max. P | 0.999993 |
| Location | 20,251,362 – 20,251,459 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 89.21 |
| Mean single sequence MFE | -23.50 |
| Consensus MFE | -20.18 |
| Energy contribution | -19.74 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.968814 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20251362 97 - 23771897 GUGGGUGUGCAUCAAUUAUUGAGAGGCUU-UUAAACCUUUUAUUGAUGUAUUUUGGGGUUUUUCGAUGUUGACAAAGCGACGUUCAUCUAUAUGUCUC ((((((((((((((((....((((((...-.....)))))))))))))))..............(((((((......))))))))))))))....... ( -23.60) >DroSec_CAF1 3718 97 - 1 GUGGGUGUGCAUCAAUUAUUGAGAGGCUU-UUAAACCUUUUAUUGAUGUAUUUUGGGGUUUUUCGAUGUCGACAAAGCGACGUUCAUCUAUAUGUCUC ((((((((((((((((....((((((...-.....)))))))))))))))..............(((((((......))))))))))))))....... ( -25.70) >DroSim_CAF1 3727 97 - 1 GUGGGUGUGCAUCAAUUAUUGAGAGGCUU-UUAAACCUUUUAUUGAUGUAUUUUGGGGUUUUUCGAUGUCGACAAGGCGACGUUCAUCUAUAUGUCUC ((((((((((((((((....((((((...-.....)))))))))))))))..............(((((((......))))))))))))))....... ( -25.70) >DroEre_CAF1 3803 88 - 1 GUGGGUGUGCAUCAAUUAUUGAGAGGUUUUUUAAACCUUUUAUUGAUGUAUUUUUGGGUUUUUCGAUGUCGACAAAGCGACGUUUAUA---------- .(..(.((((((((((....((((((((.....)))))))))))))))))).)..)........(((((((......)))))))....---------- ( -23.70) >DroYak_CAF1 3895 87 - 1 GUGGGUGUGCAUCAAUUAUUGAGAGGUUU-UUAAACCUUUUAUUGAGGUAUUUUGGGGUUUUUCGUUGUUGACAAAGCGACGUUUAUA---------- ......((((.(((((....((((((((.-...))))))))))))).))))............(((((((.....)))))))......---------- ( -18.80) >consensus GUGGGUGUGCAUCAAUUAUUGAGAGGCUU_UUAAACCUUUUAUUGAUGUAUUUUGGGGUUUUUCGAUGUCGACAAAGCGACGUUCAUCUAUAUGUCUC (((..(((((((((((....((((((.........))))))))))))))........((((((((....))).))))).)))..)))........... (-20.18 = -19.74 + -0.44)
| Location | 20,251,390 – 20,251,499 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 95.98 |
| Mean single sequence MFE | -23.86 |
| Consensus MFE | -23.96 |
| Energy contribution | -23.96 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.07 |
| Mean z-score | -3.56 |
| Structure conservation index | 1.00 |
| SVM decision value | 5.72 |
| SVM RNA-class probability | 0.999993 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20251390 109 + 23771897 AACAUCGAAAAACCCCAAAAUACAUCAAUAAAAGGUUUAA-AAGCCUCUCAAUAAUUGAUGCACACCCACAUGGUUAAGCAAAAGUGUGAUUCAUUUGUGUGCGCAAUUA ................................(((((...-.))))).....((((((.(((((((....((((....(((....)))...))))..))))))))))))) ( -19.30) >DroSec_CAF1 3746 109 + 1 GACAUCGAAAAACCCCAAAAUACAUCAAUAAAAGGUUUAA-AAGCCUCUCAAUAAUUGAUGCACACCCACAUGGUUACGCAAAAGUGUGAUUCAUUUGUGUGCACAAUUA ................................(((((...-.))))).....((((((.(((((((....((((((((((....)))))).))))..))))))))))))) ( -24.60) >DroSim_CAF1 3755 109 + 1 GACAUCGAAAAACCCCAAAAUACAUCAAUAAAAGGUUUAA-AAGCCUCUCAAUAAUUGAUGCACACCCACAUGGUUACGCAAAAGUGUGAUUCAUUUGUGUGCACAAUUA ................................(((((...-.))))).....((((((.(((((((....((((((((((....)))))).))))..))))))))))))) ( -24.60) >DroEre_CAF1 3821 110 + 1 GACAUCGAAAAACCCAAAAAUACAUCAAUAAAAGGUUUAAAAAACCUCUCAAUAAUUGAUGCACACCCACAUGCUUACGCGAAAGUGUGAUUCAUUUGUGUGCACAAUUA ................................(((((.....))))).....((((((.(((((((....(((.((((((....))))))..)))..))))))))))))) ( -26.20) >DroYak_CAF1 3913 109 + 1 AACAACGAAAAACCCCAAAAUACCUCAAUAAAAGGUUUAA-AAACCUCUCAAUAAUUGAUGCACACCCACAUGGUUACGCAAAAGUGUGAUUCAUUUGUGUGCACAAUUA ................................(((((...-.))))).....((((((.(((((((....((((((((((....)))))).))))..))))))))))))) ( -24.60) >consensus GACAUCGAAAAACCCCAAAAUACAUCAAUAAAAGGUUUAA_AAGCCUCUCAAUAAUUGAUGCACACCCACAUGGUUACGCAAAAGUGUGAUUCAUUUGUGUGCACAAUUA ................................(((((.....))))).....((((((.(((((((....((((((((((....)))))).))))..))))))))))))) (-23.96 = -23.96 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:50 2006