Locus 7543

Sequence ID 3L_DroMel_CAF1
Location 20,250,823 – 20,250,920
Length 97
Max. P 0.613900
window12258

overview

Window 8

Location 20,250,823 – 20,250,920
Length 97
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 84.52
Mean single sequence MFE -26.30
Consensus MFE -19.09
Energy contribution -20.15
Covariance contribution 1.06
Combinations/Pair 1.17
Mean z-score -1.58
Structure conservation index 0.73
SVM decision value 0.16
SVM RNA-class probability 0.613900
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20250823 97 + 23771897
--CAUCGGAUUAGCUGCAACUCAUAGUAGUGAUUCCACCUGAUUUCCAUUUCGCGAAUGAGGCUUCAUUGUCAAGAGCGGCAGACAAAGGUCUGCCAAU
--..(((((...(((((........)))))...))).(((.((((.(.....).)))).)))............))..(((((((....)))))))... ( -28.50)
>DroSec_CAF1 3207 97 + 1
--CAACGGAUUAGCUGCAACUCAUAGUAGUGAUUCCACCUGAUUUCCAUUUCGCGAAUGAGGCUCCAUCGUCAAGAGCGGCAGACAAAGGUCUGCCAAU
--....(((...(((((........)))))...)))..((.((((.(.....).)))).))((((.........))))(((((((....)))))))... ( -29.80)
>DroSim_CAF1 3216 97 + 1
--CAACGGAUUAGCUGCAACUCAUAGUAGUGAUCCCACCUGAUUUCCAUUUCGCGAAUGAGGCUCCAUUGUCAAGAGCGGCAGACAAAGGUCUGCCAAU
--....((((((.((((........))))))))))...((.((((.(.....).)))).))((((.........))))(((((((....)))))))... ( -29.80)
>DroYak_CAF1 3360 82 + 1
CACAACGAAUAAGC------ACAUAGUAGUGAUUCCACCUGAUU------UCGCGAAU-----CUCAUUGUCAAGAGCGGCAGACAGAGGUUUGCCCAU
......((((...(------((......))))))).........------..((((((-----(((.(((((......)))))...))))))))).... ( -17.10)
>consensus
__CAACGGAUUAGCUGCAACUCAUAGUAGUGAUUCCACCUGAUUUCCAUUUCGCGAAUGAGGCUCCAUUGUCAAGAGCGGCAGACAAAGGUCUGCCAAU
......((((((.((((........)))))))))).................((...(((.(......).)))...))(((((((....)))))))... (-19.09 = -20.15 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:48 2006