| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,247,733 – 20,247,833 |
| Length | 100 |
| Max. P | 0.971514 |
| Location | 20,247,733 – 20,247,833 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 73.48 |
| Mean single sequence MFE | -33.76 |
| Consensus MFE | -11.91 |
| Energy contribution | -11.75 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.35 |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.971514 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20247733 100 + 23771897 CAAAUCAAAGAAGUUUCGCAAUUUCUGUGGGAGUGGGGAAAUGGAGCUGUGUCUGGUCUAGCCUAG-----CAUCUCCACAACCCCACA------AGGUACUGAGCCCUAU ....(((.(((((((....))))))).)))..((((((...(((((..((((..((.....))..)-----))))))))...)))))).------.(((.....))).... ( -32.20) >DroSec_CAF1 101 106 + 1 CAAAUCAAAGAACUAUCGCGAUUUCUAUGGGAGUGGGGAUAUGGAGCUGUGUCUGCUCUAGCCUAG-----CAUCUCCAUAACCCCACAGGCUCCAGGUACUGAGCCAUAU ....(((.((((..........)))).)))..((((((.(((((((.(((....((....))...)-----)).))))))).)))))).(((((........))))).... ( -37.90) >DroSim_CAF1 102 105 + 1 CAAAUCAAAGAAGUUUCGCGAUUUCAGUG-GAGUGGGGAAAUGGAGCUGUGUCUGCUCUAGCUUAG-----GAUCUCCAUAACCCCACAGGCUCCAGGUACUGAGCCAUAU ....(((..((((((....))))))..))-).((((((..((((((....((((((....))...)-----)))))))))..)))))).(((((........))))).... ( -35.40) >DroEre_CAF1 102 97 + 1 CA-----AAGAAAUUUCGCAAUUGCUGGGGGAGUGGGGAGAUGGAGCUGUGUCUGUUUUAGCCUAA-----GACUUCCCCAUCCCAAGUUUCUCCAGAUACAAUGCU---- ..-----.((((((((.((....))(((((((((.(((...((((((.......)))))).)))..-----.)))))))))....))))))))..............---- ( -28.00) >DroYak_CAF1 102 100 + 1 CA-----AAGAAAU-UCUCAAGUGCUGGGGGAGUGGGGAAA-AGAGCAGUGUCUGGUCUAGCCUAACUAGCUACUUCCACUUCCCCAGAUGCUCCAGGUACAACGCU---- ..-----.......-(((..((((((((((((((((((...-..((((((....((.....))..))).)))..)))))))))))))).))))..))).........---- ( -35.30) >consensus CAAAUCAAAGAAAUUUCGCAAUUUCUGUGGGAGUGGGGAAAUGGAGCUGUGUCUGCUCUAGCCUAG_____CAUCUCCACAACCCCACAGGCUCCAGGUACUGAGCC_UAU ..........................(((((.((((((...((((((.......)))))).))).......))).)))))................(((.....))).... (-11.91 = -11.75 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:46 2006