Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,241,524 – 20,241,643 |
Length | 119 |
Max. P | 0.667145 |
Location | 20,241,524 – 20,241,643 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 86.50 |
Mean single sequence MFE | -29.00 |
Consensus MFE | -23.76 |
Energy contribution | -25.64 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.06 |
Mean z-score | -1.58 |
Structure conservation index | 0.82 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667145 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20241524 119 + 23771897 AGAUUCGAUUCGAUUCGAUUAAAACUCUGGUCUAUACGUGGUGAAGGCGAAUUCCAUGCAAUUCGGAUGGCAGAGUGUGUAAAUUUGAUUGAAUCAUCGAACGACAUCCAAUUGCUCAA ...((((((..((((((((((((((((((((((.(((...))).)))).....((((.(.....).)))))))))).......)))))))))))))))))).((((......)).)).. ( -31.21) >DroSec_CAF1 11027 119 + 1 AGAUUCGAUUCGAUUCGAUUAAAACUCUGGUCUAUACGUGGUGAAGGCUAUUUCCAUGCAAUUCGGAUGGCAGAGUGUGUGAAUUUGAUUGAAUCAUUGAACGACAUCCAAUUGCUCAA .(((((((((.((((((......((((((((((.(((...))).)))).....((((.(.....).))))))))))...)))))).))))))))).((((.(((.......))).)))) ( -31.90) >DroSim_CAF1 12537 119 + 1 AGAUUCGAUUCGAUUCGAUUAAAACUCUGGUCUAUACGUGGUGAAGGCAAAUUCCAUGCGAUUCGGAUGGCAGAGUGUGUGAAUUUGAUUGAAUCAUUGAACGACAUCCAAUUGAUCAA .(((((((((.((((((......((((((((((.(((...))).)))).....((((.((...)).))))))))))...)))))).))))))))).((((.(((.......))).)))) ( -33.20) >DroEre_CAF1 11754 114 + 1 AGAUUCGA-----UUCGAUUAAAACUCUGGUCUAUUCGUGCUGAAGGCAAAUUCCAUACAAUUAAGAUGGCAGAGUGUGUGAAUUUGAUUGAAUCAUUGAACUAUAUCCAAUUGCUCAA .(((((((-----((.((((...((((((.........(((.....)))....((((.(......))))))))))).....)))).)))))))))........................ ( -24.60) >DroYak_CAF1 16304 99 + 1 AGAUUCAA-----UUCGAUUAAAACUUUGGUCUAUACGUGCUGAAGGCAUAUUCCAUACAAUUAGGAUGGCAGAGUGUGUGAAUUUGAUUGAAUCAU---------------UGCUCAA .(((((((-----((.((((....(((..((........))..)))(((((((((((.(.....).))))...))))))).)))).)))))))))..---------------....... ( -24.10) >consensus AGAUUCGAUUCGAUUCGAUUAAAACUCUGGUCUAUACGUGGUGAAGGCAAAUUCCAUGCAAUUCGGAUGGCAGAGUGUGUGAAUUUGAUUGAAUCAUUGAACGACAUCCAAUUGCUCAA .(((((((((.((((((......((((((((((.((.....)).)))).....((((.(.....).))))))))))...)))))).)))))))))........................ (-23.76 = -25.64 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:44 2006