Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,239,857 – 20,239,954 |
Length | 97 |
Max. P | 0.842035 |
Location | 20,239,857 – 20,239,954 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 78.66 |
Mean single sequence MFE | -25.04 |
Consensus MFE | -14.92 |
Energy contribution | -15.65 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.33 |
Mean z-score | -1.95 |
Structure conservation index | 0.60 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.842035 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20239857 97 + 23771897 CCACCUAC---GAAUGGCACACAUCCCCUGCCCCAAAUG--UCUCUACUACUCACUGAAAAGUGCUAGGAGCGCUGAGUAAAUCAGUGCCACGUUGAGGCAG ........---....((((.........)))).....((--((((.((....((((....))))...(..(((((((.....)))))))..))).)))))). ( -28.80) >DroSec_CAF1 9434 100 + 1 CCACCUACGACGAAUGGCACACAUCCCCUGCCCCAAAUG--UCUCUACUACUCACUGAAAAGUGCUAGCAGCGCUGAGUAAAUCAGUGUCACGUUGAGGCAG ...............((((.........)))).....((--((((.((....((((....))))...(..(((((((.....)))))))..))).)))))). ( -25.80) >DroSim_CAF1 10690 100 + 1 CCACCUACGACGAAUGGCACACAUCCCCUGCCCCAAAUG--UCUCUACUACUCACUGAAAAGUGCUAGCAGCGCUGAGUAAAUCAGUGCCACGUUGAGGCAG ...(((.(((((...((((.........)))).......--......(((..((((....)))).)))..(((((((.....)))))))..))))))))... ( -27.60) >DroEre_CAF1 10126 95 + 1 CCACCUAC---GAAU--CCCACAUCCCCUGCCCCAAAUA--UAUCUAAUACUCACUCAAAAGUGCUAGGAGCGUUGAGUAAAUCAGCGCUACGUUUAGGCAA ........---....--...........((((..((((.--..((((.((((........)))).))))((((((((.....))))))))..)))).)))). ( -21.10) >DroYak_CAF1 14651 95 + 1 CCACCUAC---GAAU--CCCACAUCUCCUGCCCCAAAUG--UCUCUACUACUCACUCAGAAGUGCUAGGAGCACUGAGUAAAUCAGUGCUACGUUGAGGCAA ........---....--...........((((...((((--(.((((.((((........)))).))))((((((((.....)))))))))))))..)))). ( -24.40) >DroPer_CAF1 9273 100 + 1 CCACGCAUAACGAAA--CUCGUGGCCCCCACUCUAAGCCUUCUUCUGUUACUUACCCAAAAAAACAAGGAGCGCCGAGUAGGCUAAUGCUCCAUUCAGGCAA ....((...(((...--..))).))...........((((.....((((.............)))).((((((((.....)))....)))))....)))).. ( -22.52) >consensus CCACCUAC___GAAU__CACACAUCCCCUGCCCCAAAUG__UCUCUACUACUCACUCAAAAGUGCUAGGAGCGCUGAGUAAAUCAGUGCCACGUUGAGGCAA ............................((((.(((........(((.((((........)))).)))..(((((((.....)))))))....))).)))). (-14.92 = -15.65 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:42 2006