| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,239,503 – 20,239,616 |
| Length | 113 |
| Max. P | 0.623522 |
| Location | 20,239,503 – 20,239,616 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.07 |
| Mean single sequence MFE | -32.29 |
| Consensus MFE | -17.33 |
| Energy contribution | -18.00 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.623522 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20239503 113 - 23771897 ---C----GUAUAUCUUUUGCAGGCCUCCUCCAUGAACCACGAUGCCACCGCCUCGCUGUAUCGUUUCAAUGCCACCAACGGCAUCACCUGCAUUCUGAUGCAGGUGGACGGACUUAUCA ---.----(((.......))).....((((((.((((..(((((((...((...))..)))))))))))(((((......))))).((((((((....))))))))))).)))....... ( -33.00) >DroPse_CAF1 8891 120 - 1 ACCCUCGUGGAACCCCUUUGCAGGCAUCAUCGAUGAACCAUGAUGCCACUGCCUCGCUGUACCGCUUCAAUGCCACCAACGGAAUCACCUGCAUCCUAAUGCAGGUCGACGGUCUCAUUG ......((((.((......(((((((((((.(......)))))))))..)))......)).))))..(((((..(((..((.....((((((((....))))))))))..)))..))))) ( -37.30) >DroEre_CAF1 9777 113 - 1 ---C----GGAAAUCUUUUCCAGGCCUCCUCCAUGAACCACGAUGCCACCGCCUCGCUGUAUCGUUUUAAUGCCACCAACGGAAUCACCUGCAUCCUGAUGCAGGUGGACGGACUUAUCA ---.----((((.....)))).(((.......((((..(((((.((....)).))).))..))))......))).....((...((((((((((....)))))))))).))......... ( -31.92) >DroWil_CAF1 9713 110 - 1 ---U----GG---UUGUUUUUAGGCCUCGUCAAUGAAUCAUGAAGCGACCACUUCGAUUUAUCGUUUUAAUGCCACAAAUGGAAUAACCUGCAUUUUAAUGCAAGUUGACGGUUUAAUUG ---(----((---(((((((...(..(((....)))..)..))))))))))...(((((.(((((.......(((....)))..((((.(((((....))))).)))))))))..))))) ( -24.30) >DroYak_CAF1 14302 113 - 1 ---A----GUAAAUCUUUCCCAGGCCUCCUCCAUGAACCACGAUGCCACCGCCUCGCUGUAUCGUUUUAAUGCCACAAACGGCAUAACUUGCAUCCUGAUGCAGGUGGACGGACUUAUCA ---.----..................((((((((((..(((((.((....)).))).))..))))....(((((......))))).((((((((....))))))))))).)))....... ( -29.20) >DroPer_CAF1 8929 120 - 1 ACCCUCGUGGAACCCCUUUGCAGGCAUCAUCGAUGAACCAUGAUGCCACUGCUUCGCUGUACCGCUUCAAUGCCACCAACGGAAUCACCUGCAUCCUAAUGCAGGUCGACGGUCUCAUUG ......((((.((......(((((((((((.(......)))))))))..)))......)).))))..(((((..(((..((.....((((((((....))))))))))..)))..))))) ( -38.00) >consensus ___C____GGAAAUCUUUUGCAGGCCUCCUCCAUGAACCACGAUGCCACCGCCUCGCUGUAUCGUUUCAAUGCCACCAACGGAAUCACCUGCAUCCUAAUGCAGGUGGACGGACUUAUCA ......................(((.......((((..(((((.((....)).))).))..))))......))).....((.....((((((((....))))))))...))......... (-17.33 = -18.00 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:41 2006