Locus 7536

Sequence ID 3L_DroMel_CAF1
Location 20,239,032 – 20,239,150
Length 118
Max. P 0.654103
window12250

overview

Window 0

Location 20,239,032 – 20,239,150
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.07
Mean single sequence MFE -27.02
Consensus MFE -18.56
Energy contribution -19.16
Covariance contribution 0.60
Combinations/Pair 1.08
Mean z-score -2.01
Structure conservation index 0.69
SVM decision value 0.25
SVM RNA-class probability 0.654103
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20239032 118 - 23771897
ACAAUUAAAACAUACUGCUGCCUAGGCAAGUUCGAGCAUUGAGAAUACAUUAUAGGCAAUUAC--ACUAGCAAGUACAACAGCAAAACUAUCUGGGUAGCAAAGUGGAAACUUCCCACGG
...............(((((((((((..((((...((.(((....(((....(((........--.)))....))))))..))..)))).)))))))))))..((((.......)))).. ( -25.60)
>DroSec_CAF1 8612 120 - 1
ACAAUUAAAACCUACUGCUGCCUAGUCAAGUUCGAGCAUUGAGAAUACAUUAUAGGCAAUUACACACUAGCAAGUACAAGAGCAAAACUAUAUGGGUAGCAAGGUGGAAACUUCCCACCA
...............(((((((((....((((...((.(((....(((....(((...........)))....))))))..))..))))...))))))))).(((((.......))))). ( -26.80)
>DroSim_CAF1 9865 120 - 1
ACAAUUAAAACCUACUGCUGCCUAGGCAAGUUCGAGCAUUGAGAAUACAUUAUAGGCAAUUACACACUAACAAGUACAACAGCAAAACUUUAUGGGUAGCAAGGUGGAAACUUCCCACCA
...............(((((((((...(((((...((..(((.......)))...))........(((....)))..........)))))..))))))))).(((((.......))))). ( -26.40)
>DroEre_CAF1 9330 112 - 1
ACAAUUACGACCU---GCUGCCUAGGCAAGUUCAAGCAUUAAGAAUGAAUUAUAGCCAACUAC--CCGAGCAAGUACACUAGCAA-ACUAUCUAGGUAGCAAGGUGGAAACUUCCCAU--
.......(.((((---(((((((((((.((((((..(.....)..))))))...)))......--....((.((....)).))..-......)))))))).)))).)...........-- ( -30.40)
>DroYak_CAF1 13868 115 - 1
GCAAUUAAGACCUAGUGCUGCCUAGGCAGGUUUAAGCAUUGAGAAUACAUUAUAGCCAAUUAC--ACUAGCAAGUACAACAGCAA-ACUAUCUAGGUAGCAAGGUGGAAACUUCCCAC--
.........((((..((((((((((((.(((.(((((..(((.......)))..))...))).--))).))..((......))..-.....))))))))))))))(((....)))...-- ( -25.90)
>consensus
ACAAUUAAAACCUACUGCUGCCUAGGCAAGUUCGAGCAUUGAGAAUACAUUAUAGGCAAUUAC__ACUAGCAAGUACAACAGCAAAACUAUCUGGGUAGCAAGGUGGAAACUUCCCAC__
.........((((..(((((((((((...((((.........))))...........................((......)).......)))))))))))))))(((....)))..... (-18.56 = -19.16 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:40 2006