Locus 7534

Sequence ID 3L_DroMel_CAF1
Location 20,236,350 – 20,236,451
Length 101
Max. P 0.685582
window12246

overview

Window 6

Location 20,236,350 – 20,236,451
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 81.39
Mean single sequence MFE -32.26
Consensus MFE -23.20
Energy contribution -25.84
Covariance contribution 2.64
Combinations/Pair 1.17
Mean z-score -1.68
Structure conservation index 0.72
SVM decision value 0.32
SVM RNA-class probability 0.685582
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20236350 101 - 23771897
UUACGGCUUUCCUUUUUAACUGCGACCGGUAAAUGGAUCUUAAACUGGGUGCGCUCGGUUAAAGGGAUCCGCCCGUGCAGUUAGGGGAAAGAACGGUUCAA
...((.(((((((..((((((((.((.(((....(((((((.(((((((....)))))))...)))))))))).)))))))))))))))))..))...... ( -39.30)
>DroSec_CAF1 5907 101 - 1
UCACGGCUGUCCUUUUUAACUGCGACCGGUAUAUGGAUCUUCAACUGGGUGUGCUCAGUUAAAGAUAUCCGCAUAUGCAGUUAGAGGAAAGAACGGUUCAA
....((((((.((((((((((((.....((((.((((((((.(((((((....))))))).))))..)))).)))))))))))...))))).))))))... ( -32.60)
>DroSim_CAF1 7155 101 - 1
UCACGGCUGUCCUUUUUAACUGCGACCGGUAGAUGGAUCCUCAACUGGGUGUGCUCAGUUAAAGAUAUCCGCAUAUGCAGUUAGAGGAAAGAACGGUUCAA
....((((((.(((((((.((((.....)))).))))((((((((((.((((((................)))))).))))).)))))))).))))))... ( -30.49)
>DroEre_CAF1 6700 101 - 1
GCACGGCUGUCCUUUUCAACUGCGACCGGUAAAGGGAUCCUUAGCUGGGUGCACUCGGUUUUAUGGACCCGCCCGUACGGUUAGCAGAAAAAACGGCUCGG
...(((((((..(((((...((((((((.....(((.(((..(((((((....)))))))....)))))).......))))).)))))))).))))).)). ( -36.70)
>DroYak_CAF1 11219 101 - 1
UCACGUCUGUCCCUUACAAAUGCGACCGGUUAAUGGAUCCUCAACUAGGUGUACUCGGUUUUAUGGAUCCGCCCGUACAGUUAGCAGAAAAAACGGCUAAA
((.(((.(((.....))).))).)).(((....(((((((..(((..((....))..)))....))))))).))).....(((((.(......).))))). ( -22.20)
>consensus
UCACGGCUGUCCUUUUUAACUGCGACCGGUAAAUGGAUCCUCAACUGGGUGUGCUCGGUUAAAGGGAUCCGCCCGUGCAGUUAGAGGAAAGAACGGUUCAA
....((((((.(((((((((((((...(((....((((((..(((((((....)))))))....)))))))))..))))))))...))))).))))))... (-23.20 = -25.84 +   2.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:37 2006