Locus 7532

Sequence ID 3L_DroMel_CAF1
Location 20,233,303 – 20,233,407
Length 104
Max. P 0.994048
window12243

overview

Window 3

Location 20,233,303 – 20,233,407
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 95.00
Mean single sequence MFE -28.83
Consensus MFE -27.19
Energy contribution -26.55
Covariance contribution -0.64
Combinations/Pair 1.09
Mean z-score -1.73
Structure conservation index 0.94
SVM decision value 2.45
SVM RNA-class probability 0.994048
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20233303 104 - 23771897
CGAGGGAUACGUGGAGAAGAUGGAUGUUUCCACUUGCGAAACUCCAUACUACAAUACUCUUUACAAUGGGUAAGUGGGCUUAAAAACUUACCUGUCGGUCGAAG
(((..(((..((((((((((((((.((((((....).)))))))))).)).......)))))))...((((((((..........)))))))))))..)))... ( -29.71)
>DroSec_CAF1 2867 104 - 1
CGGGGGAUACGUGGAGAAGAUGGAUGUUUCCACUUGCGAAACUCCAUACUACAAUACUCUUUACAAUGGGUAAGUGGGCUUAAAAACUUACCUAUCGGUCUAUG
....((((..((((((((((((((.((((((....).)))))))))).)).......))))))).((((((((((..........))))))))))..))))... ( -29.41)
>DroSim_CAF1 4101 104 - 1
CGAGGGAUACGUGGAGAAGAUGGAUGUUUCCACUUGCGAAACUCCAUACUACAAUACUCUUUACAAUGGGUAAGUGGGCUUAAAAACUUACCUAUCGGUCGAAG
(((..(((..((((((((((((((.((((((....).)))))))))).)).......)))))))...((((((((..........)))))))))))..)))... ( -29.41)
>DroEre_CAF1 3734 104 - 1
UGAUGGAUACGUGGAGAAGAUGGAUGUUUCCACAUGCGAAACUCCAUACUACAAUACUCUUUACAAUGGGUAAGUGGGCUUAAAAACUUACCUGUCGGAAGAAG
..........((((((((((((((.((((((....).)))))))))).)).......)))))))...((((((((..........)))))))).((....)).. ( -27.81)
>DroYak_CAF1 8258 104 - 1
UGAGGGAUACGUGGAGAAGAUGGAUGUUUCCACUUGUGAAACUCCAUACUACAAUACUCUUUACAAUGGGUAAGUGGGUUUAAAAACUUACCUGUCGGAAGAAG
..........((((((((((((((.((((((....).)))))))))).)).......)))))))...((((((((..........)))))))).((....)).. ( -27.81)
>consensus
CGAGGGAUACGUGGAGAAGAUGGAUGUUUCCACUUGCGAAACUCCAUACUACAAUACUCUUUACAAUGGGUAAGUGGGCUUAAAAACUUACCUGUCGGUCGAAG
(((.......((((((((((((((.((((((....).)))))))))).)).......)))))))..(((((((((..........))))))))))))....... (-27.19 = -26.55 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:34 2006