| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,228,222 – 20,228,333 |
| Length | 111 |
| Max. P | 0.657396 |
| Location | 20,228,222 – 20,228,333 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 86.49 |
| Mean single sequence MFE | -24.83 |
| Consensus MFE | -21.49 |
| Energy contribution | -21.83 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.657396 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20228222 111 - 23771897 UAAUUGAACUCAAUGAUUUACCAUUCGAGUAAGUUGCGUGUGAAAAGCUCAUACAUUUGCAGAUAUGCAAAGGAAGGCGGAGUUAAAUACUUUGGGAGAUCGAUAUAAGAA ..(((((.(((.........((.(((...........((((((.....)))))).((((((....))))))))).))((((((.....)))))).))).)))))....... ( -26.10) >DroSec_CAF1 41575 111 - 1 UAAUUGAACUCGAUGAUUUACCAUUCGAGUAAGUUGCGUGUGAAAAGCUCAUAUAUUUGCAGAUAUGCAAAGGAAGGCGGAGUUAAAUGCUCUGGGAGAUCGAUACAAGAA (((((..((((((((......)).)))))).))))).((((((....(((.....((((((....))))))......((((((.....)))))).))).)).))))..... ( -27.10) >DroSim_CAF1 37021 96 - 1 CAAUUGAA---------------UUCGAGUAAGUUGCGUGUGAAAAACUCAUAUAUUUGCAGAUAUGCAAAGGAAGGCGGAGUUAAAUGCUCUGGGAGAUCGAUACUAGAA ..(((((.---------------(((.........((((((((.....)))))).((((((....)))))).....))(((((.....)))))..))).)))))....... ( -21.30) >consensus UAAUUGAACUC_AUGAUUUACCAUUCGAGUAAGUUGCGUGUGAAAAGCUCAUAUAUUUGCAGAUAUGCAAAGGAAGGCGGAGUUAAAUGCUCUGGGAGAUCGAUACAAGAA ..(((((.(((............(((...........((((((.....)))))).((((((....)))))).)))..((((((.....)))))).))).)))))....... (-21.49 = -21.83 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:30 2006