Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,241,864 – 2,241,960 |
Length | 96 |
Max. P | 0.522188 |
Location | 2,241,864 – 2,241,960 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 84.51 |
Mean single sequence MFE | -43.62 |
Consensus MFE | -31.56 |
Energy contribution | -34.15 |
Covariance contribution | 2.59 |
Combinations/Pair | 1.17 |
Mean z-score | -1.93 |
Structure conservation index | 0.72 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522188 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2241864 96 - 23771897 CUGCUCCGCCUCGGGCGAGGGCUGCUUGGGGGAGGCACCUGCAGGCAGUCCUCCGUCCAGCGGCGUCACCUUGAACUGGGUUUUGCUGACUUCGCA ..((........((((((((((((((((.(((.....))).))))))))))).)))))(((((((..((((......))))..))))).))..)). ( -47.20) >DroSec_CAF1 2749 96 - 1 CUGCUCCGCCUCGGGCGAGGGCUGCUUGGAGGAGGCACCUGCAGGACGUCCUCCGUCAAGCGGCGUCACCUUAAAUUGGGUUUUGCUGACUUCGCA .....(((...)))((((((((((((((..((((((.((....))..).)))))..))))))))...((((......))))........)))))). ( -40.40) >DroSim_CAF1 5000 96 - 1 CUGCUCCGCCUCGGGCGAGGGCUGCUUGGGGGAGGCACCUGCAGGAAGUCCUCCGUCCAGCGGCGUCACCUUGAACUGGGUUUUGCUGACUUCGCA ..((........(((((((((((.((((.(((.....))).)))).)))))).)))))(((((((..((((......))))..))))).))..)). ( -40.60) >DroEre_CAF1 5529 96 - 1 CUGCUCCGUCUCGGGCGAGGGCUGCUUGGGGGAGCCACCUGCAGGUAGCCCUCCGUCCAGCGGCGUCACCUGGAAAAAGGUUUUGCUGACUUGGCA ..(((..(((..((((((((((((((((.(((.....))).))))))))))).)))))...((((..((((......))))..)))))))..))). ( -50.60) >DroYak_CAF1 5687 96 - 1 CUGCUCCGAUUCGGGCGAGGGCUGCUUGGGGGAGGCACCUGCAGGUAGUCCUCCGUCCAGCGGCGUUACCUGGAAAGAGGUUUUGCUGACUUGGCA ..((.(((...)))))((((((((((((.(((.....))).)))))))))))).(((.(((((((..((((......))))..))))).)).))). ( -46.80) >DroPer_CAF1 511 93 - 1 CUGAUCAGCCUCCGGCGAUGGCUGCUUGGGCGAACCAACAGCUGCUGGA---CCGUCCAGAGGCGUCACUUGAAACUCUGUUUUGGUGAUCCGGCA .......(((.(((((...(((((.((((.....))))))))))))))(---(((..(((((...((....))..)))))...)))).....))). ( -36.10) >consensus CUGCUCCGCCUCGGGCGAGGGCUGCUUGGGGGAGGCACCUGCAGGUAGUCCUCCGUCCAGCGGCGUCACCUGGAACUGGGUUUUGCUGACUUCGCA ..((........((((((((((((((((.(((.....))).))))))))))).)))))..(((((..((((......))))..))))).....)). (-31.56 = -34.15 + 2.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:19 2006