Locus 7529

Sequence ID 3L_DroMel_CAF1
Location 20,227,532 – 20,227,643
Length 111
Max. P 0.925436
window12238

overview

Window 8

Location 20,227,532 – 20,227,643
Length 111
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 80.05
Mean single sequence MFE -30.40
Consensus MFE -20.49
Energy contribution -20.47
Covariance contribution -0.03
Combinations/Pair 1.30
Mean z-score -2.33
Structure conservation index 0.67
SVM decision value 1.17
SVM RNA-class probability 0.925436
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20227532 111 + 23771897
UGGCGUUAUUCUUGAGCCAAAUCAA-UUGACAGGCUGAAAAGGAAACCAUUUCAGCAGUCAAAGACUGCUGAGGAAAUUAAAGAAAUCUGACGGAUUUCCAUUGUCGACUUU
((((.(((....)))))))......-(((((((.((....)).........(((((((((...)))))))))(((((((..((....))....))))))).))))))).... ( -33.80)
>DroSec_CAF1 40895 111 + 1
UGGAGUUAUUCUUGGGCCAAAUCAA-AUGACAGGCUGAAAAGGAAACCAAUUCAGCAGUCAAAGACUGCUGGGGAAAUUAAAGAAAUCUGACGGACUUCCAUUGUCGACUUU
.((((((.(((((.((((...((..-..))..))))...)))))...(((((((((((((...)))))))))((((.((..((....))....)).))))))))..)))))) ( -28.10)
>DroSim_CAF1 36322 111 + 1
UGGAGUUAUUCUUGGGCCAAAUCAA-AUGACAGGCUGAAAAGGAAACCAAUUCAGCAGUCAAAGACUGCUGGGGAAAUUAAAGAAAUCUGACGGAUUUCCAUUGUCGACUUU
.((((((.(((((.((((...((..-..))..))))...)))))...(((((((((((((...)))))))))(((((((..((....))....)))))))))))..)))))) ( -31.80)
>DroEre_CAF1 37153 109 + 1
CGCAGGGUUUCUU-GGCCAAAUCUA-AUGACAGGCUGAAAAGGAAACCAU-UCAGCGGUCGAAAGCUGCUGGGGAAAUUAAAGAUAUCUGACGGAUUUCCAUUGUCGACUUU
(((((((((((((-((((...((..-..))..))))....))))))))..-(((((((.(....))))))))(((((((..((....))....))))))).))).))..... ( -35.80)
>DroYak_CAF1 50004 111 + 1
CGCAGUUUUUCUUAGGCCAAAUCUA-AUGACAGGCCGAAGAGGAAACCAUUUCAGCAGUCAAAGGCUGCUGGGGAAAUUAAAGAAAUCUGACGGAUUUCCAUUGUCGACUUU
(((((((((((((.((((...((..-..))..)))).))))))).......((((((((.....))))))))(((((((..((....))....))))))))))).))..... ( -35.50)
>DroPer_CAF1 27293 96 + 1
--------------AAACAUAUUUAAUUGUCA--CAGAGAACAAUACGCUCGUAGCAGUCAACAGAUGCUGUGGAAAUAAAUUAAAUCUGACGGAUUUUCAUUGUCAGUUUU
--------------......((((((((.(((--(((..........((.....)).(((....))).)))))).....))))))))(((((((.......))))))).... ( -17.40)
>consensus
UGGAGUUAUUCUUGGGCCAAAUCAA_AUGACAGGCUGAAAAGGAAACCAUUUCAGCAGUCAAAGACUGCUGGGGAAAUUAAAGAAAUCUGACGGAUUUCCAUUGUCGACUUU
...........................((((((..................((((((((.....))))))))(((((((..((....))....))))))).))))))..... (-20.49 = -20.47 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:29 2006