Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,226,013 – 20,226,114 |
Length | 101 |
Max. P | 0.707823 |
Location | 20,226,013 – 20,226,114 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 72.03 |
Mean single sequence MFE | -25.17 |
Consensus MFE | -15.40 |
Energy contribution | -15.98 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.29 |
Mean z-score | -1.32 |
Structure conservation index | 0.61 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707823 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20226013 101 - 23771897 ------A--AAGGCAAAGUUUUCUGGAUAGCGCCUGCCUCGCAACUCCAGUGGCGCACGCAUUCCGCCUCCGGAAAAGUAUUUGUA-------ACAGUGUUUAAACUCACAUAGCC ------.--..(((..(.(((((((((..((((((((...)))((....)))))))..((.....)).))))))))).).......-------...(((........)))...))) ( -27.50) >DroSec_CAF1 39480 78 - 1 ------A--AAGGCAAAGUUUUCCGGAUG-----------------------GCGCACGCAUUCCGUCUCCGGAAAAGUAUUUGUA-------ACAGUGUUUAAACUCACAUAGCC ------.--..(((..(.(((((((((.(-----------------------(((.........))))))))))))).).......-------...(((........)))...))) ( -22.70) >DroSim_CAF1 34876 78 - 1 ------A--AAGACAAAGUUUUUCGGAUA-----------------------GCGCACGCAUUCCGCCUCCGGAAAAGUAUUUGUA-------ACAGUGUUUAAACUCACAUAGCC ------.--...(((((.(((((((((..-----------------------(((.........))).)))))))))...))))).-------...(((........)))...... ( -16.20) >DroEre_CAF1 35692 100 - 1 ---------ACGGCAAAGUUUUCCGGAUAGCGCCUGCUUCGCAAUUCCAGUGGCGCACACAUUCCGCCUCCGGAAACGCAUUUGUA-------ACAGUGUUUAAACUCACAUAGCC ---------..(((...((((((((((..(((((.(((..........))))))))...(.....)..)))))))).)).......-------...(((........)))...))) ( -25.80) >DroYak_CAF1 48495 100 - 1 ---------ACGGCAAAGUUUUCCGGAUAGCGCCUGCUUCGCAAUUCCAGUGGCGCACACAUUCCGCCUCCGGAAACGCAUUUGUA-------ACAGUGUUUAAACUCACAUAGCC ---------..(((...((((((((((..(((((.(((..........))))))))...(.....)..)))))))).)).......-------...(((........)))...))) ( -25.80) >DroAna_CAF1 36095 112 - 1 CUACCGAGGCCGGAGAACUUUUCCGGAUUACGCCUGCUGCGUAAUUUCAGAGGCGC-CCCAUUCCGCCUUCGGCAAAGUAUUUGUAGCAUUAAACACUGUUCAGGCUCC---ACUC .....(((...((((.(((((.(((((((((((.....))))))))...((((((.-.......))))))))).))))).((((.((((........))))))))))))---.))) ( -33.00) >consensus ______A__AAGGCAAAGUUUUCCGGAUAGCGCCUGCUUCGCAAUUCCAGUGGCGCACGCAUUCCGCCUCCGGAAAAGUAUUUGUA_______ACAGUGUUUAAACUCACAUAGCC ............(((((.(((((((((..(((.......))).........((((.........)))))))))))))...)))))...........(((........)))...... (-15.40 = -15.98 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:28 2006