Locus 7527

Sequence ID 3L_DroMel_CAF1
Location 20,225,552 – 20,225,654
Length 102
Max. P 0.972722
window12236

overview

Window 6

Location 20,225,552 – 20,225,654
Length 102
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 91.20
Mean single sequence MFE -28.02
Consensus MFE -22.50
Energy contribution -22.14
Covariance contribution -0.36
Combinations/Pair 1.19
Mean z-score -2.23
Structure conservation index 0.80
SVM decision value 1.70
SVM RNA-class probability 0.972722
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20225552 102 + 23771897
GGGAGCAUCUGUGUGAUAUGAUUAGGUUGCAGUUGCACAACACCGAG-AUGCAAACUACAUGAAUUACAAGUUUGUGAUUUAAUCAAGAUUGCAUAUCGUUUA
....(((.(((((...((....))...))))).))).......(((.-((((((.((...(((((((((....)))))))))....)).)))))).))).... ( -24.10)
>DroSec_CAF1 39038 102 + 1
GGGAGCAUCUAUGUGAUAUGAUUAGGUUGCAGUUGCACAACACCGAG-AUGCACACUGCAUGAAUUACAAGUUUGUGAGUUAAUCAAGAUUGCAUAACGUUUA
..((((...((((..((.(((((((..(((((((((((........)-.)))).))))))....(((((....))))).)))))))..))..))))..)))). ( -25.80)
>DroSim_CAF1 34447 102 + 1
GGGAGCAUCUAUGUGAUAUGAUUAGGUUGCAGUUGCACAACACCGAG-AUGCACACUGCAUGAAUUACAAGUUUGUGAUUUAAUCAAGAUUGCAUAACGUUUA
..((((...((((..((.(((((....(((((((((((........)-.)))).)))))).((((((((....)))))))))))))..))..))))..)))). ( -26.90)
>DroEre_CAF1 35215 102 + 1
GGGCGCAUCUGUGUGAUAUGAUUAGGUUGCAGUUGCAUAACACCCAGAAUGCAUGCUACAAGAACUACAAGUUUGUGAUUUAAUCAAG-UUGCACAUCGCUUA
(((((....((((..((.(((((((((..(((((((((..........))))).)))....((((.....)))))..))))))))).)-)..)))).))))). ( -31.50)
>DroYak_CAF1 48019 101 + 1
GGGAGCAUCUAUGUAAUAUGAUUAGGUUGCAGUUGCAUAACACUGAG-AUGCAUGCUGCAUGAAUUACAAGUUUGUGAUUUAAUCGAG-UUGCAUAUCGCUUA
..((((...((((((((.(((((....(((((((((((.........-))))).)))))).((((((((....))))))))))))).)-)))))))..)))). ( -31.80)
>consensus
GGGAGCAUCUAUGUGAUAUGAUUAGGUUGCAGUUGCACAACACCGAG_AUGCACACUGCAUGAAUUACAAGUUUGUGAUUUAAUCAAGAUUGCAUAUCGUUUA
..((((...(((((((..(((((((((((((((((((............)))).)))))((((((.....))))))))))))))))...)))))))..)))). (-22.50 = -22.14 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:27 2006